| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77456770
Identifier: 77456770
GI number: 77456770
Start: 634088
End: 636574
Strand: Direct
Name: 77456770
Synonym: Pfl01_0542
Alternate gene names: NA
Gene position: 634088-636574 (Clockwise)
Preceding gene: 77456769
Following gene: 77456771
Centisome position: 9.85
GC content: 64.46
Gene sequence:
>2487_bases ATGCCTGACCTGCTTGACCGCTACCCGCTGACGGCGGGCACCTATCACGAACTGCTCGACGACAGCGGGGCGGTGCGCCC GCACTGGCGGCGACTGGTCGACCAATTGCAGCGCAGCACCCCGGCGCAACTGGTGCAGCGTCAGGCGTTGCTGACCCGGC AGATTCAGGAAAACGGTGTCACCTACAACGTCTATGCCGACCCCAAGGGGGCGGACCGTCCGTGGGAACTGGATCTGCTG CCCCACGTGATCGCCGCTGACGAGTGGCAACAGCTGTCTGCCGGAATCGCCCAGCGCGCGCGGCTGCTCAATGCGGTGCT GGCGGACCTGTATGGCCCGCAGCAGTTGATCCGCGAAGGCTTGTTGCCGGCGGAGCTGGTGTTCGGCCACAACAACTTTC TCTGGCCCTGTCAGGGCATTGCGCCGCCGGACGGGGCCTTTCTGCATCTGTATGCCGTGGATCTGGCGCGCACGCCGGAC GGACGCTGGTGGGTGACGGCGGATCGCACTCAGGCGCCATCGGGGGCCGGGTATGCGCTGGAAAATCGCACCATCGTGTC CCGCGCCTTCCCCGAGTTGTACCGGGATCTGAAGGTGCAACATCTGGCCGGCTTCTTCCGCACCCTGCAGGAAACTCTGG CCCATCAGGCCCCGTGCGACGATGACGCGCCGCTGGTGGTGCTGCTGACCCCGGGGCGTTTCAACGAAAGCTATTTCGAA CATCTTTATCTGGCGCGCCAGCTCGGTTATCCGCTGGTGGAGGGCGGTGACCTGACGGTGCGTGATGCCACGGTCTACCT GAAAACCCTCAGTGGCCTGCGCCGGGTGCACGCGATCATGCGCCGCCTCGACGATGACTTCTGCGATCCGCTGGAATTGC GTACGGATTCGGCGCTGGGCGTTCCCGGACTGCTGGAGGCGGTGCGTCAGGGCCGGGTGCTGGTGGCCAATGCGCTGGGC AGTGGCGTACTGGAGTCGCCGGGGCTGCTGGGGTTCCTGCCGAAGATCAATCAGTACCTGTTCGGTGAAGAGCTGATCCT GCCGTCCATTGCCACGTGGTGGTGCGGCGAAGCGCCGGTGCTGGCCCAGGCCCTGGAAAAATTGCCGGAGCTGCTGATCA AACCGGCGTTCCCGTCGCAAAGCTTTACGCCGGTATTTGGTCGGGATCTGAGCGAAAAACAGCGTGAAAGTCTCGCCGCG CGCATGCAGGCACGGCCTTATGCGTATGTCGCGCAAGAACTCGCGCAGCTGTCCCAGGCGCCGATCTGGCAGCCCGAGGA CGGGCAACTGCAACCCCGGGCAATCGGCATGCGCATGTACGCGGTGGCCAGTCACGACGGTTATCGGGTGCTGCCCGGTG GCCTGACCCGGGTCGCGGCCGAAGCCGATGCCGAAGTGGTGTCGATGCAGCGCGGTGGCGCGAGCAAGGACACCTGGGTG CTGGGGGATCGACCGCCGAGCGGGGAACAGTGGAAAGCCCAGCGCAATATCGGCGTGCCTGATCTGGTGCGGCGCGATCC GTACCTGCCGTCGCGGGTGGTGGAGAATCTGTTCTGGTTCGGCCGTTACTGCGAGCGCTGTGACGACAGCGCGCGGTTGT TGCGGATCATGCTGGCGCGGTACGTCGACGGTGATGATCCACAGGCCTTGCAGGCCGCTGTGGATCTGGGCGAGCGGCTG ATGCTGCTGCCGGATGAAGGTGAACTTCCGGAACGCTTGCTCGCGGCACTGCTCGGCGAGGACTGGTCGTTCAGCCTGCG CTCCAACCTGCAGCGCTTGCAGTGGGCGGCTTCGCAGGTGCGCGGCAAGTTGTCCCGGGAAAACTGGCAGGCGCTGGTGG AGTTGCAACGTGAGGCTTCGGAACTTGACACCGACGAACCGGACTTCGGCGAGCTGCTGGATTTTCTAAACCGGCTGGTG ATGTCGCTGGCGGCGCTGTCCGGGTTTGCCCTCGACGACATGACCCGTGACGAAGGCTGGCGCTTCCTGATGATCGGCCG GCGCATCGAACGCCTGCAATTTCTCAGCAGCAGCCTTGCGGGTTTTCTGCGCGGCGCCGGGGCGTTCGATCAGGCCGGGC TTGAGTGGTTGCTGGAGCTGGGCAACAGCAGCATCACCTATCGCTCGCGTTATCTGGCAGTGGCGCAGTTGATTCCGGTG CTCGACCTGTTGCTGCTGGATGAGCAGAACCCCCATGCGGTGTTGTTCCAGTTGAAACTTGTGACTCGCACCCTCAAGCG TTTGAATGATGACTTCGGAGTGCCGAGGGAGGCAGGATTGCCGACGCTGGTCGAGCGTCTGGCGCGTTTCGACTTGAGCT GTCTGGAGAATCCTTTGTTCGGCGAACCCAGCGTGCGCGCGGCCCTCGACGGTCTGGCGGATCTGCTGCAGGAGATCGCC GACGCCAGCAGTCAGGTGTCGGATCGTCTGGCCCTGCGCCATTTCGCCCATGTCGATGATGTCAGCCAGCGCACGGTGTC CGTCTGA
Upstream 100 bases:
>100_bases CGACGTTTCTAAGTCGTACGCGACGCCCGGATTTTTCGTATATCCGGGCGTCATGTGCCTGCGTTAGTCTGACCGTTCCT TGCCGGCTGCCGAGCTTTCC
Downstream 100 bases:
>100_bases TGAGCGCCCATTACCAGATCCTTCACGACACGTGCTATCGCTACGACAGTCCGGTGTCCCTGGCCCAGCAACTGGCGCAC CTGTGGCCGCGCGAATGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 828; Mature: 827
Protein sequence:
>828_residues MPDLLDRYPLTAGTYHELLDDSGAVRPHWRRLVDQLQRSTPAQLVQRQALLTRQIQENGVTYNVYADPKGADRPWELDLL PHVIAADEWQQLSAGIAQRARLLNAVLADLYGPQQLIREGLLPAELVFGHNNFLWPCQGIAPPDGAFLHLYAVDLARTPD GRWWVTADRTQAPSGAGYALENRTIVSRAFPELYRDLKVQHLAGFFRTLQETLAHQAPCDDDAPLVVLLTPGRFNESYFE HLYLARQLGYPLVEGGDLTVRDATVYLKTLSGLRRVHAIMRRLDDDFCDPLELRTDSALGVPGLLEAVRQGRVLVANALG SGVLESPGLLGFLPKINQYLFGEELILPSIATWWCGEAPVLAQALEKLPELLIKPAFPSQSFTPVFGRDLSEKQRESLAA RMQARPYAYVAQELAQLSQAPIWQPEDGQLQPRAIGMRMYAVASHDGYRVLPGGLTRVAAEADAEVVSMQRGGASKDTWV LGDRPPSGEQWKAQRNIGVPDLVRRDPYLPSRVVENLFWFGRYCERCDDSARLLRIMLARYVDGDDPQALQAAVDLGERL MLLPDEGELPERLLAALLGEDWSFSLRSNLQRLQWAASQVRGKLSRENWQALVELQREASELDTDEPDFGELLDFLNRLV MSLAALSGFALDDMTRDEGWRFLMIGRRIERLQFLSSSLAGFLRGAGAFDQAGLEWLLELGNSSITYRSRYLAVAQLIPV LDLLLLDEQNPHAVLFQLKLVTRTLKRLNDDFGVPREAGLPTLVERLARFDLSCLENPLFGEPSVRAALDGLADLLQEIA DASSQVSDRLALRHFAHVDDVSQRTVSV
Sequences:
>Translated_828_residues MPDLLDRYPLTAGTYHELLDDSGAVRPHWRRLVDQLQRSTPAQLVQRQALLTRQIQENGVTYNVYADPKGADRPWELDLL PHVIAADEWQQLSAGIAQRARLLNAVLADLYGPQQLIREGLLPAELVFGHNNFLWPCQGIAPPDGAFLHLYAVDLARTPD GRWWVTADRTQAPSGAGYALENRTIVSRAFPELYRDLKVQHLAGFFRTLQETLAHQAPCDDDAPLVVLLTPGRFNESYFE HLYLARQLGYPLVEGGDLTVRDATVYLKTLSGLRRVHAIMRRLDDDFCDPLELRTDSALGVPGLLEAVRQGRVLVANALG SGVLESPGLLGFLPKINQYLFGEELILPSIATWWCGEAPVLAQALEKLPELLIKPAFPSQSFTPVFGRDLSEKQRESLAA RMQARPYAYVAQELAQLSQAPIWQPEDGQLQPRAIGMRMYAVASHDGYRVLPGGLTRVAAEADAEVVSMQRGGASKDTWV LGDRPPSGEQWKAQRNIGVPDLVRRDPYLPSRVVENLFWFGRYCERCDDSARLLRIMLARYVDGDDPQALQAAVDLGERL MLLPDEGELPERLLAALLGEDWSFSLRSNLQRLQWAASQVRGKLSRENWQALVELQREASELDTDEPDFGELLDFLNRLV MSLAALSGFALDDMTRDEGWRFLMIGRRIERLQFLSSSLAGFLRGAGAFDQAGLEWLLELGNSSITYRSRYLAVAQLIPV LDLLLLDEQNPHAVLFQLKLVTRTLKRLNDDFGVPREAGLPTLVERLARFDLSCLENPLFGEPSVRAALDGLADLLQEIA DASSQVSDRLALRHFAHVDDVSQRTVSV >Mature_827_residues PDLLDRYPLTAGTYHELLDDSGAVRPHWRRLVDQLQRSTPAQLVQRQALLTRQIQENGVTYNVYADPKGADRPWELDLLP HVIAADEWQQLSAGIAQRARLLNAVLADLYGPQQLIREGLLPAELVFGHNNFLWPCQGIAPPDGAFLHLYAVDLARTPDG RWWVTADRTQAPSGAGYALENRTIVSRAFPELYRDLKVQHLAGFFRTLQETLAHQAPCDDDAPLVVLLTPGRFNESYFEH LYLARQLGYPLVEGGDLTVRDATVYLKTLSGLRRVHAIMRRLDDDFCDPLELRTDSALGVPGLLEAVRQGRVLVANALGS GVLESPGLLGFLPKINQYLFGEELILPSIATWWCGEAPVLAQALEKLPELLIKPAFPSQSFTPVFGRDLSEKQRESLAAR MQARPYAYVAQELAQLSQAPIWQPEDGQLQPRAIGMRMYAVASHDGYRVLPGGLTRVAAEADAEVVSMQRGGASKDTWVL GDRPPSGEQWKAQRNIGVPDLVRRDPYLPSRVVENLFWFGRYCERCDDSARLLRIMLARYVDGDDPQALQAAVDLGERLM LLPDEGELPERLLAALLGEDWSFSLRSNLQRLQWAASQVRGKLSRENWQALVELQREASELDTDEPDFGELLDFLNRLVM SLAALSGFALDDMTRDEGWRFLMIGRRIERLQFLSSSLAGFLRGAGAFDQAGLEWLLELGNSSITYRSRYLAVAQLIPVL DLLLLDEQNPHAVLFQLKLVTRTLKRLNDDFGVPREAGLPTLVERLARFDLSCLENPLFGEPSVRAALDGLADLLQEIAD ASSQVSDRLALRHFAHVDDVSQRTVSV
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007296 - InterPro: IPR007297 - InterPro: IPR007302 [H]
Pfam domain/function: PF04168 DUF403; PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 92604; Mature: 92472
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDLLDRYPLTAGTYHELLDDSGAVRPHWRRLVDQLQRSTPAQLVQRQALLTRQIQENGV CCCHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC TYNVYADPKGADRPWELDLLPHVIAADEWQQLSAGIAQRARLLNAVLADLYGPQQLIREG EEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC LLPAELVFGHNNFLWPCQGIAPPDGAFLHLYAVDLARTPDGRWWVTADRTQAPSGAGYAL CCCHHEEECCCCEEECCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEECCCCCCCCCCEEE ENRTIVSRAFPELYRDLKVQHLAGFFRTLQETLAHQAPCDDDAPLVVLLTPGRFNESYFE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHH HLYLARQLGYPLVEGGDLTVRDATVYLKTLSGLRRVHAIMRRLDDDFCDPLELRTDSALG HHHHHHHHCCCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCC VPGLLEAVRQGRVLVANALGSGVLESPGLLGFLPKINQYLFGEELILPSIATWWCGEAPV CHHHHHHHHCCCEEEEEHHCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHCCCCHH LAQALEKLPELLIKPAFPSQSFTPVFGRDLSEKQRESLAARMQARPYAYVAQELAQLSQA HHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC PIWQPEDGQLQPRAIGMRMYAVASHDGYRVLPGGLTRVAAEADAEVVSMQRGGASKDTWV CCCCCCCCCCCHHHHCEEEEEEECCCCCEECCCHHHHHHHHCCHHHHHHHCCCCCCCCEE LGDRPPSGEQWKAQRNIGVPDLVRRDPYLPSRVVENLFWFGRYCERCDDSARLLRIMLAR ECCCCCCCCCHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH YVDGDDPQALQAAVDLGERLMLLPDEGELPERLLAALLGEDWSFSLRSNLQRLQWAASQV HCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RGKLSRENWQALVELQREASELDTDEPDFGELLDFLNRLVMSLAALSGFALDDMTRDEGW HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC RFLMIGRRIERLQFLSSSLAGFLRGAGAFDQAGLEWLLELGNSSITYRSRYLAVAQLIPV EEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH LDLLLLDEQNPHAVLFQLKLVTRTLKRLNDDFGVPREAGLPTLVERLARFDLSCLENPLF HHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC GEPSVRAALDGLADLLQEIADASSQVSDRLALRHFAHVDDVSQRTVSV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PDLLDRYPLTAGTYHELLDDSGAVRPHWRRLVDQLQRSTPAQLVQRQALLTRQIQENGV CCHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC TYNVYADPKGADRPWELDLLPHVIAADEWQQLSAGIAQRARLLNAVLADLYGPQQLIREG EEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC LLPAELVFGHNNFLWPCQGIAPPDGAFLHLYAVDLARTPDGRWWVTADRTQAPSGAGYAL CCCHHEEECCCCEEECCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEECCCCCCCCCCEEE ENRTIVSRAFPELYRDLKVQHLAGFFRTLQETLAHQAPCDDDAPLVVLLTPGRFNESYFE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHH HLYLARQLGYPLVEGGDLTVRDATVYLKTLSGLRRVHAIMRRLDDDFCDPLELRTDSALG HHHHHHHHCCCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCC VPGLLEAVRQGRVLVANALGSGVLESPGLLGFLPKINQYLFGEELILPSIATWWCGEAPV CHHHHHHHHCCCEEEEEHHCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHCCCCHH LAQALEKLPELLIKPAFPSQSFTPVFGRDLSEKQRESLAARMQARPYAYVAQELAQLSQA HHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC PIWQPEDGQLQPRAIGMRMYAVASHDGYRVLPGGLTRVAAEADAEVVSMQRGGASKDTWV CCCCCCCCCCCHHHHCEEEEEEECCCCCEECCCHHHHHHHHCCHHHHHHHCCCCCCCCEE LGDRPPSGEQWKAQRNIGVPDLVRRDPYLPSRVVENLFWFGRYCERCDDSARLLRIMLAR ECCCCCCCCCHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH YVDGDDPQALQAAVDLGERLMLLPDEGELPERLLAALLGEDWSFSLRSNLQRLQWAASQV HCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RGKLSRENWQALVELQREASELDTDEPDFGELLDFLNRLVMSLAALSGFALDDMTRDEGW HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC RFLMIGRRIERLQFLSSSLAGFLRGAGAFDQAGLEWLLELGNSSITYRSRYLAVAQLIPV EEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH LDLLLLDEQNPHAVLFQLKLVTRTLKRLNDDFGVPREAGLPTLVERLARFDLSCLENPLF HHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC GEPSVRAALDGLADLLQEIADASSQVSDRLALRHFAHVDDVSQRTVSV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]