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The map label for this gene is orn [H]

Identifier: 77456743

GI number: 77456743

Start: 597324

End: 597866

Strand: Direct

Name: orn [H]

Synonym: Pfl01_0515

Alternate gene names: 77456743

Gene position: 597324-597866 (Clockwise)

Preceding gene: 77456741

Following gene: 77456744

Centisome position: 9.28

GC content: 59.85

Gene sequence:

>543_bases
ATGCAAAACCCGCAGAATCTGATCTGGATCGACCTCGAAATGACCGGTCTCGATCCGGAAAACGACGTCATCATCGAGAT
GGCCACCATCGTCACCGACAGTGACCTGAACACTTTGGCCGAAGGCCCGGTGATCGCCATCCACCATAGCGACGAAGTCC
TCGCCCGCATGGACGAGTGGAACACCCGCACCCACGGCAACTCCGGCCTGACCCAGCGCGTGCGTGAAAGCCGTGTGAGC
ATGGCCGAGGCTGAAGCCGAAACCATCGCCTTCCTCGAACAGTGGGTGCCGAAGGGCAAGTCGCCGATCTGTGGCAACAG
CATCTGCCAGGATCGCCGCTTCCTTTATACCCACATGAAGGCGCTGGAAAGCTACTTCCACTACCGCAACCTCGACGTCT
CCACGCTCAAGGAGCTGGCCGCGCGCTGGGCGCCGGACGTGCGTGACAGCTTCAAGAAGGGCAGCACTCACCTCGCACTG
GATGACATCCGCGAGTCGATTGCCGAGCTGCAGCACTACCGCAAGCATTTCATCAAGTTCTGA

Upstream 100 bases:

>100_bases
CCGTCTGAAGAATACAGCGATTAGGTAAAACGGCCGCGAGTTTAGCACGCCCGGCAGGCTGCCTAGGCTAAACTGCGCAG
CATTGCTCAGGAGCCGAAAT

Downstream 100 bases:

>100_bases
GATCGGCACCCTCGCCGGGGCGCCCTCTTTTGGTGCCTCGGCGAAGTGAGTAGACTGCGCGCCTTCCTGCCAGGATCGCC
ACCATGTTGCTGATGCTCTA

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MQNPQNLIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEVLARMDEWNTRTHGNSGLTQRVRESRVS
MAEAEAETIAFLEQWVPKGKSPICGNSICQDRRFLYTHMKALESYFHYRNLDVSTLKELAARWAPDVRDSFKKGSTHLAL
DDIRESIAELQHYRKHFIKF

Sequences:

>Translated_180_residues
MQNPQNLIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEVLARMDEWNTRTHGNSGLTQRVRESRVS
MAEAEAETIAFLEQWVPKGKSPICGNSICQDRRFLYTHMKALESYFHYRNLDVSTLKELAARWAPDVRDSFKKGSTHLAL
DDIRESIAELQHYRKHFIKF
>Mature_180_residues
MQNPQNLIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEVLARMDEWNTRTHGNSGLTQRVRESRVS
MAEAEAETIAFLEQWVPKGKSPICGNSICQDRRFLYTHMKALESYFHYRNLDVSTLKELAARWAPDVRDSFKKGSTHLAL
DDIRESIAELQHYRKHFIKF

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=175, Percent_Identity=49.7142857142857, Blast_Score=181, Evalue=3e-46,
Organism=Escherichia coli, GI87082382, Length=178, Percent_Identity=67.9775280898876, Blast_Score=259, Evalue=9e-71,
Organism=Caenorhabditis elegans, GI17557752, Length=176, Percent_Identity=52.2727272727273, Blast_Score=175, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6323088, Length=187, Percent_Identity=38.5026737967914, Blast_Score=124, Evalue=9e-30,
Organism=Drosophila melanogaster, GI21355135, Length=175, Percent_Identity=49.1428571428571, Blast_Score=177, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20712; Mature: 20712

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNPQNLIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEVLARMDEW
CCCCCCEEEEEEEEECCCCCCCEEEEHHHHHCCCCHHHHCCCCEEEEECCHHHHHHHHHC
NTRTHGNSGLTQRVRESRVSMAEAEAETIAFLEQWVPKGKSPICGNSICQDRRFLYTHMK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
ALESYFHYRNLDVSTLKELAARWAPDVRDSFKKGSTHLALDDIRESIAELQHYRKHFIKF
HHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNPQNLIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEVLARMDEW
CCCCCCEEEEEEEEECCCCCCCEEEEHHHHHCCCCHHHHCCCCEEEEECCHHHHHHHHHC
NTRTHGNSGLTQRVRESRVSMAEAEAETIAFLEQWVPKGKSPICGNSICQDRRFLYTHMK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
ALESYFHYRNLDVSTLKELAARWAPDVRDSFKKGSTHLALDDIRESIAELQHYRKHFIKF
HHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA