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The map label for this gene is patM [H]

Identifier: 77456453

GI number: 77456453

Start: 265919

End: 266584

Strand: Direct

Name: patM [H]

Synonym: Pfl01_0225

Alternate gene names: 77456453

Gene position: 265919-266584 (Clockwise)

Preceding gene: 77456452

Following gene: 77456454

Centisome position: 4.13

GC content: 60.36

Gene sequence:

>666_bases
ATGACCTTCGATTACGCATTTATCCTCAGCACCCTGCCGGCGTTTCTCAAGGCCGTGGGCGTGACGCTGCAGGTCGGTTT
GATCGCCATTGGCACCTCGCTGCTGGTGGCGCTGCTCAATGCGACGATTCTGGTGTTCCGCACGCCTTACCTGCAAAAAC
TGGTCGGGCTGTATGTGGAACTGGCGCGCAACACGCCGCTGCTGATCCAGTTGTTCTTCGTCTACTTCGCGCTGCCGGCA
CTGGGGATCAAGGTTTCCGGATTCACCGCGGCGATCATCACCATGACTTTTCTTGGCGGTGCCTACCTCACCGAAGTGCT
GCGTGCCGGCGTCGATGCGGTGCCTCAGGCGCAACTGGAGTCCGGGCGCTCCATCGGTTTGTCCCACGGCCAGTTGCTGC
GCTACGTGATCCTGCCGCAGGCCGGGATTCTCAGCCTGCCGTCGCTGTTCGCCAATTTCATTTTCCTGCTCAAGGAGACC
ACCGTGGTCTCGGCCGTGGCGGTGCCGGAGATTCTCTACACCACCAAGAGCTACATCGCGCTCTACTACAAGACCTACGA
AATGCTCGCCGTGCTGACGCTGATCTGCGTGCTGCTGTTCCTGCCGCTGTCGCTGCTGTTGAGCCGTCTGGAAAGGAGGC
TCCAGCATGGCCAGTTCGGGTCTTGA

Upstream 100 bases:

>100_bases
ATTCTTTTTCTTATACCTTTAAAGTCGGTGCCTGCCGGACAGTTACCCGCTGTCCATGGACTGCACCACCGTCGCTTACC
GAGCGGCGTCAGGATGTTTC

Downstream 100 bases:

>100_bases
ACTGCTCTGGGTGTCGTTGCCGCAATTGGCCAAAGGCGCCGGGCAAACCCTGTCGATCTCGTTCCTCAGTATCGCCATCA
GCACCGTCGGCGGCGTGCTC

Product: amino acid ABC transporter permease

Products: ADP; phosphate; L-glutamine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTFDYAFILSTLPAFLKAVGVTLQVGLIAIGTSLLVALLNATILVFRTPYLQKLVGLYVELARNTPLLIQLFFVYFALPA
LGIKVSGFTAAIITMTFLGGAYLTEVLRAGVDAVPQAQLESGRSIGLSHGQLLRYVILPQAGILSLPSLFANFIFLLKET
TVVSAVAVPEILYTTKSYIALYYKTYEMLAVLTLICVLLFLPLSLLLSRLERRLQHGQFGS

Sequences:

>Translated_221_residues
MTFDYAFILSTLPAFLKAVGVTLQVGLIAIGTSLLVALLNATILVFRTPYLQKLVGLYVELARNTPLLIQLFFVYFALPA
LGIKVSGFTAAIITMTFLGGAYLTEVLRAGVDAVPQAQLESGRSIGLSHGQLLRYVILPQAGILSLPSLFANFIFLLKET
TVVSAVAVPEILYTTKSYIALYYKTYEMLAVLTLICVLLFLPLSLLLSRLERRLQHGQFGS
>Mature_220_residues
TFDYAFILSTLPAFLKAVGVTLQVGLIAIGTSLLVALLNATILVFRTPYLQKLVGLYVELARNTPLLIQLFFVYFALPAL
GIKVSGFTAAIITMTFLGGAYLTEVLRAGVDAVPQAQLESGRSIGLSHGQLLRYVILPQAGILSLPSLFANFIFLLKETT
VVSAVAVPEILYTTKSYIALYYKTYEMLAVLTLICVLLFLPLSLLLSRLERRLQHGQFGS

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787030, Length=217, Percent_Identity=29.9539170506912, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=30.3317535545024, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=24.6575342465753, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788645, Length=209, Percent_Identity=26.3157894736842, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787087, Length=137, Percent_Identity=32.1167883211679, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787086, Length=188, Percent_Identity=27.6595744680851, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786874, Length=179, Percent_Identity=24.5810055865922, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788646, Length=130, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI48994930, Length=161, Percent_Identity=27.9503105590062, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082239, Length=118, Percent_Identity=33.0508474576271, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24152; Mature: 24021

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFDYAFILSTLPAFLKAVGVTLQVGLIAIGTSLLVALLNATILVFRTPYLQKLVGLYVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LARNTPLLIQLFFVYFALPALGIKVSGFTAAIITMTFLGGAYLTEVLRAGVDAVPQAQLE
HHCCCHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SGRSIGLSHGQLLRYVILPQAGILSLPSLFANFIFLLKETTVVSAVAVPEILYTTKSYIA
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYYKTYEMLAVLTLICVLLFLPLSLLLSRLERRLQHGQFGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TFDYAFILSTLPAFLKAVGVTLQVGLIAIGTSLLVALLNATILVFRTPYLQKLVGLYVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LARNTPLLIQLFFVYFALPALGIKVSGFTAAIITMTFLGGAYLTEVLRAGVDAVPQAQLE
HHCCCHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SGRSIGLSHGQLLRYVILPQAGILSLPSLFANFIFLLKETTVVSAVAVPEILYTTKSYIA
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYYKTYEMLAVLTLICVLLFLPLSLLLSRLERRLQHGQFGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-glutamine [Periplasm]; H2O [C]

Specific reaction: ATP + L-glutamine [Periplasm] + H2O = ADP + phosphate + L-glutamine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA