Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

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The map label for this gene is fyuA [H]

Identifier: 77456444

GI number: 77456444

Start: 257235

End: 259595

Strand: Direct

Name: fyuA [H]

Synonym: Pfl01_0216

Alternate gene names: 77456444

Gene position: 257235-259595 (Clockwise)

Preceding gene: 77456441

Following gene: 77456446

Centisome position: 4.0

GC content: 62.47

Gene sequence:

>2361_bases
ATGAGTCCGTTGAACCTCGCTTCACCGCCGCCGCCACGACGGCTCAAACGTCTGCCCTTGGCCCTGTTGCTGGCGGGGAG
TGCCAGTTGGACCCACGGCTACGCTGCGGAAACCGAAACCCCTGTGCCGGCACCGGCAGGCAAGACCGCGACCGCCACTT
CGCAACTGGAAACCGTGACCGTCACCACCCGCCGTCGCGAAGAAAGCTCTCAGGATGTGCCGACGCCAATGAGCGTGGTG
AGCGGCACGACTTTGGAGACGCAACGGGTCTACCGAATCCAGGATCTTCAGCAACTGGTGCCCAGCGTCAACGTCGCCTA
CATGCATGCGCGTCAGTCCAGCGTGTCGATCCGGGGTCTGGGCAACAACCCGGCCAGCGATGGTCTGGAAGGCAGCGTCG
GGCTGTACATCGATAACGTTTATCTGGGCCGTCCGGGAATGGCGGTGTTCGACCTGATGGACATCGAGCAGCTCGAAGTC
CTGCGCGGGCCGCAAGGGACGTTGTTCGGCAAGAACACCACCGCCGGGGTGATCAACATCAGCACCCGCGCGCCGAGTTT
CACCCCGGAGCGCAGCATCGAAACCTCGGTCGGCGAGGACGGTTATTTCCAGACCAAGGGCACCATTTCCGGGCCCCTCA
ACGATGTGCTGGCCGGGCGTTTGTCGGCCTATCGCACCCGCAGCGATGGCGACATCAAGAACGAATTCAACGGCCATGAC
CTGAACGGTGGTTCCCGCGACGGCTTCCGGGCGCAGTTGCTGTTCAAGCCCAACGAGAATTTCAACCTGCGCTGGATCGG
TGACTACAACGAAGAGGATTCCAGCGCCGGCACCCGGGTGCTGTACAACACCGGACCGACCATCAATGGCGTCAATCTCT
ACTCGGCCCGCGCCGCCGCTGCCGGCGCGACGCTGGTCAACGGCTCGCACCGCAAGGTCAACCTGGACAACGATCAGCAC
GTCACCGTGCATCAGGGCGGCACCTCGGTGGAGGCCAACTGGACCCTGCCGAGCGACTTCACCCTGACCTCGGTCAGCTC
CTATCGCTTCTGGAATTTCACCCCGCGCAACGACGACGGCCTCAATGTGCCGGCCACCTACAACGCCGGGGTGTCGGTTG
AGGACAAACAGTATTCCCAGGAATTTCGCCTCGCGTCGCCCAAGGGCGAGTTCTTCGATTACGTCCTCGGCGCCTACTAT
TTCGGATCGGACCTGGACAACAAATCCTTCGCCTATTACGGCCCGCAGGCCGACATCTGGAACGGCACGCCACGGGGCGC
GCTGGCCAACGTCAATAGCGTCGGCCGTGGTCATATCAAGACCGACAGTTTCGCGTTGTTCGCCCAAGGCACCTGGCACC
TGACCCCACGTCTGGATTTCACCGCCGGGGTGCGTGGCACCTATGAAGAGAAGAACGCCTGGGTCAATCGTGATGCGCCG
GTCGGTGGCGCCGCTGTCACGGGTGCCGCAGCCACCGCGCGACGCGGCCGGACTGGCGCCTACGATTCCGGCGACCTGAA
CCAGTACAGCTCCAGCCCGTCCGGATTGCTCAACCTCAGCTATCGCTTCACCGATGATCTGCTCGGCTACGCCACGTTGT
CTCACGGCGAAAAATCCGGCGGGGTCAACCTCGTGGTCGGCTCGGCCCCGACCGCTGGTGCCGACTCGTTGCTGATCGGC
ACCGAGCGCGCCAACAACGCCGAACTCGGCTTCAAGAGCACGCTGTGGGATCGCCGTTTGCAGCTCAACGCCAACGTGTT
CTGGACCCAGGTCAACGCTTACCAGACCAACGCCTACGACGACGTCAACCGCGTGCAATACCTGACCAACGCCGGTTCAG
TGCGCTCACGTGGCGTGGAGTTCGAAAGCACCGTGATCCCGCTGCGTGGCCTGACGCTGAACTTCAACGGCTCGTACAAC
GACGTCAGCTATCTCTCCTACAAGGACGCGCCGTGCCCGCCTGAAGTCAGCCAGGCACCGGGTGCTCCGGCCTCGTGCGA
CCTCAGCGGTCATCAGGTGGTCGGCGCCTCGAAATGGATCGGCAACGCCAACGGCAAGTACGAATGGAATCTGGATAACG
GGCTGCAACCTTATGTCACCGGCAGCTACGCGTTCCGCTCCAAAGCGGTGGGCACGGTCGAGGATTCCGACTACGGCCAG
ATCCCGAGTTACGCGGTGGTCAATCTCTCCACTGGCCTGCGCGGCGATTTCAATCAGGGTCAGTGGGACGTCTCGCTGTG
GCTGAAAAACGCCTTCGACAAAACCTACTACACGACCCTGTGGACCGGCGGCAACGGCGGCTATGAAGGCCTGCTCGGTA
CGCCTAGAACGTTAGGTGTGAGTGGTCGATACGACTTTTAA

Upstream 100 bases:

>100_bases
ATCTCTTATGCAGTAAATCTTTGTAAAAACATAAATAAATAACTTAAAAGAATATGCGGCACGGAAGATGTCTGCGTGTT
TTTTGACCAGGAGCAGTCCC

Downstream 100 bases:

>100_bases
AGGTGGTTTGAAATGCACTTTCTGGCAGGGCGCCTGTTACGCCTGCCAGAAAGGGGGGGCCGAATATTACGTGTAGATGT
ATCACGACGTACAACAGACA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: IPR65; IRPC [H]

Number of amino acids: Translated: 786; Mature: 785

Protein sequence:

>786_residues
MSPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVTVTTRRREESSQDVPTPMSVV
SGTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGLGNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEV
LRGPQGTLFGKNTTAGVINISTRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHD
LNGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAAAGATLVNGSHRKVNLDNDQH
VTVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDGLNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYY
FGSDLDNKSFAYYGPQADIWNGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAP
VGGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSGGVNLVVGSAPTAGADSLLIG
TERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYDDVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYN
DVSYLSYKDAPCPPEVSQAPGAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQ
IPSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGVSGRYDF

Sequences:

>Translated_786_residues
MSPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVTVTTRRREESSQDVPTPMSVV
SGTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGLGNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEV
LRGPQGTLFGKNTTAGVINISTRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHD
LNGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAAAGATLVNGSHRKVNLDNDQH
VTVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDGLNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYY
FGSDLDNKSFAYYGPQADIWNGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAP
VGGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSGGVNLVVGSAPTAGADSLLIG
TERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYDDVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYN
DVSYLSYKDAPCPPEVSQAPGAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQ
IPSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGVSGRYDF
>Mature_785_residues
SPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVTVTTRRREESSQDVPTPMSVVS
GTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGLGNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEVL
RGPQGTLFGKNTTAGVINISTRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHDL
NGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAAAGATLVNGSHRKVNLDNDQHV
TVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDGLNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYYF
GSDLDNKSFAYYGPQADIWNGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAPV
GGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSGGVNLVVGSAPTAGADSLLIGT
ERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYDDVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYND
VSYLSYKDAPCPPEVSQAPGAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQI
PSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGVSGRYDF

Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 84970; Mature: 84839

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVT
CCCCCCCCCCCHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
VTTRRREESSQDVPTPMSVVSGTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGL
EEEECCCCCCCCCCCCHHHHCCCEECHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEC
GNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEVLRGPQGTLFGKNTTAGVINI
CCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCHHHHHHHCCCCCCEECCCCCCEEEEE
STRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHD
ECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCC
LNGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAA
CCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEECCHHHH
AGATLVNGSHRKVNLDNDQHVTVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDG
CCEEEECCCCEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEECCEEEEECCCCCCCC
LNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYYFGSDLDNKSFAYYGPQADIW
CCCCEECCCCCEECHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
NGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAP
CCCCCCCEECCCCCCCCCEECCCEEEEECCEEEECCCCCEECCCCCCCHHCCCEECCCCC
VGGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSG
CCCCEECCCHHHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEEECCHHHHEEEECCCCCCC
GVNLVVGSAPTAGADSLLIGTERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYD
CEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCEEEECCEEEEEEEEEEECCCCC
DVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYNDVSYLSYKDAPCPPEVSQAP
CHHHHHEECCCCCHHHCCCEECCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCC
GAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQ
CCCCCCCCCCCEEEEHHHHCCCCCCEEEECCCCCCCCEEECCEEECCCCCCCCCCCCCCC
IPSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGV
CCCEEEEEECCCCCCCCCCCEEEEEEEEHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEC
SGRYDF
CCCCCC
>Mature Secondary Structure 
SPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVT
CCCCCCCCCCHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
VTTRRREESSQDVPTPMSVVSGTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGL
EEEECCCCCCCCCCCCHHHHCCCEECHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEC
GNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEVLRGPQGTLFGKNTTAGVINI
CCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCHHHHHHHCCCCCCEECCCCCCEEEEE
STRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHD
ECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCC
LNGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAA
CCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEECCHHHH
AGATLVNGSHRKVNLDNDQHVTVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDG
CCEEEECCCCEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEECCEEEEECCCCCCCC
LNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYYFGSDLDNKSFAYYGPQADIW
CCCCEECCCCCEECHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
NGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAP
CCCCCCCEECCCCCCCCCEECCCEEEEECCEEEECCCCCEECCCCCCCHHCCCEECCCCC
VGGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSG
CCCCEECCCHHHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEEECCHHHHEEEECCCCCCC
GVNLVVGSAPTAGADSLLIGTERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYD
CEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCEEEECCEEEEEEEEEEECCCCC
DVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYNDVSYLSYKDAPCPPEVSQAP
CHHHHHEECCCCCHHHCCCEECCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCC
GAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQ
CCCCCCCCCCCEEEEHHHHCCCCCCEEEECCCCCCCCEEECCEEECCCCCCCCCCCCCCC
IPSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGV
CCCEEEEEECCCCCCCCCCCEEEEEEEEHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEC
SGRYDF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA