| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is fyuA [H]
Identifier: 77456444
GI number: 77456444
Start: 257235
End: 259595
Strand: Direct
Name: fyuA [H]
Synonym: Pfl01_0216
Alternate gene names: 77456444
Gene position: 257235-259595 (Clockwise)
Preceding gene: 77456441
Following gene: 77456446
Centisome position: 4.0
GC content: 62.47
Gene sequence:
>2361_bases ATGAGTCCGTTGAACCTCGCTTCACCGCCGCCGCCACGACGGCTCAAACGTCTGCCCTTGGCCCTGTTGCTGGCGGGGAG TGCCAGTTGGACCCACGGCTACGCTGCGGAAACCGAAACCCCTGTGCCGGCACCGGCAGGCAAGACCGCGACCGCCACTT CGCAACTGGAAACCGTGACCGTCACCACCCGCCGTCGCGAAGAAAGCTCTCAGGATGTGCCGACGCCAATGAGCGTGGTG AGCGGCACGACTTTGGAGACGCAACGGGTCTACCGAATCCAGGATCTTCAGCAACTGGTGCCCAGCGTCAACGTCGCCTA CATGCATGCGCGTCAGTCCAGCGTGTCGATCCGGGGTCTGGGCAACAACCCGGCCAGCGATGGTCTGGAAGGCAGCGTCG GGCTGTACATCGATAACGTTTATCTGGGCCGTCCGGGAATGGCGGTGTTCGACCTGATGGACATCGAGCAGCTCGAAGTC CTGCGCGGGCCGCAAGGGACGTTGTTCGGCAAGAACACCACCGCCGGGGTGATCAACATCAGCACCCGCGCGCCGAGTTT CACCCCGGAGCGCAGCATCGAAACCTCGGTCGGCGAGGACGGTTATTTCCAGACCAAGGGCACCATTTCCGGGCCCCTCA ACGATGTGCTGGCCGGGCGTTTGTCGGCCTATCGCACCCGCAGCGATGGCGACATCAAGAACGAATTCAACGGCCATGAC CTGAACGGTGGTTCCCGCGACGGCTTCCGGGCGCAGTTGCTGTTCAAGCCCAACGAGAATTTCAACCTGCGCTGGATCGG TGACTACAACGAAGAGGATTCCAGCGCCGGCACCCGGGTGCTGTACAACACCGGACCGACCATCAATGGCGTCAATCTCT ACTCGGCCCGCGCCGCCGCTGCCGGCGCGACGCTGGTCAACGGCTCGCACCGCAAGGTCAACCTGGACAACGATCAGCAC GTCACCGTGCATCAGGGCGGCACCTCGGTGGAGGCCAACTGGACCCTGCCGAGCGACTTCACCCTGACCTCGGTCAGCTC CTATCGCTTCTGGAATTTCACCCCGCGCAACGACGACGGCCTCAATGTGCCGGCCACCTACAACGCCGGGGTGTCGGTTG AGGACAAACAGTATTCCCAGGAATTTCGCCTCGCGTCGCCCAAGGGCGAGTTCTTCGATTACGTCCTCGGCGCCTACTAT TTCGGATCGGACCTGGACAACAAATCCTTCGCCTATTACGGCCCGCAGGCCGACATCTGGAACGGCACGCCACGGGGCGC GCTGGCCAACGTCAATAGCGTCGGCCGTGGTCATATCAAGACCGACAGTTTCGCGTTGTTCGCCCAAGGCACCTGGCACC TGACCCCACGTCTGGATTTCACCGCCGGGGTGCGTGGCACCTATGAAGAGAAGAACGCCTGGGTCAATCGTGATGCGCCG GTCGGTGGCGCCGCTGTCACGGGTGCCGCAGCCACCGCGCGACGCGGCCGGACTGGCGCCTACGATTCCGGCGACCTGAA CCAGTACAGCTCCAGCCCGTCCGGATTGCTCAACCTCAGCTATCGCTTCACCGATGATCTGCTCGGCTACGCCACGTTGT CTCACGGCGAAAAATCCGGCGGGGTCAACCTCGTGGTCGGCTCGGCCCCGACCGCTGGTGCCGACTCGTTGCTGATCGGC ACCGAGCGCGCCAACAACGCCGAACTCGGCTTCAAGAGCACGCTGTGGGATCGCCGTTTGCAGCTCAACGCCAACGTGTT CTGGACCCAGGTCAACGCTTACCAGACCAACGCCTACGACGACGTCAACCGCGTGCAATACCTGACCAACGCCGGTTCAG TGCGCTCACGTGGCGTGGAGTTCGAAAGCACCGTGATCCCGCTGCGTGGCCTGACGCTGAACTTCAACGGCTCGTACAAC GACGTCAGCTATCTCTCCTACAAGGACGCGCCGTGCCCGCCTGAAGTCAGCCAGGCACCGGGTGCTCCGGCCTCGTGCGA CCTCAGCGGTCATCAGGTGGTCGGCGCCTCGAAATGGATCGGCAACGCCAACGGCAAGTACGAATGGAATCTGGATAACG GGCTGCAACCTTATGTCACCGGCAGCTACGCGTTCCGCTCCAAAGCGGTGGGCACGGTCGAGGATTCCGACTACGGCCAG ATCCCGAGTTACGCGGTGGTCAATCTCTCCACTGGCCTGCGCGGCGATTTCAATCAGGGTCAGTGGGACGTCTCGCTGTG GCTGAAAAACGCCTTCGACAAAACCTACTACACGACCCTGTGGACCGGCGGCAACGGCGGCTATGAAGGCCTGCTCGGTA CGCCTAGAACGTTAGGTGTGAGTGGTCGATACGACTTTTAA
Upstream 100 bases:
>100_bases ATCTCTTATGCAGTAAATCTTTGTAAAAACATAAATAAATAACTTAAAAGAATATGCGGCACGGAAGATGTCTGCGTGTT TTTTGACCAGGAGCAGTCCC
Downstream 100 bases:
>100_bases AGGTGGTTTGAAATGCACTTTCTGGCAGGGCGCCTGTTACGCCTGCCAGAAAGGGGGGGCCGAATATTACGTGTAGATGT ATCACGACGTACAACAGACA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 786; Mature: 785
Protein sequence:
>786_residues MSPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVTVTTRRREESSQDVPTPMSVV SGTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGLGNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEV LRGPQGTLFGKNTTAGVINISTRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHD LNGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAAAGATLVNGSHRKVNLDNDQH VTVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDGLNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYY FGSDLDNKSFAYYGPQADIWNGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAP VGGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSGGVNLVVGSAPTAGADSLLIG TERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYDDVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYN DVSYLSYKDAPCPPEVSQAPGAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQ IPSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGVSGRYDF
Sequences:
>Translated_786_residues MSPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVTVTTRRREESSQDVPTPMSVV SGTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGLGNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEV LRGPQGTLFGKNTTAGVINISTRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHD LNGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAAAGATLVNGSHRKVNLDNDQH VTVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDGLNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYY FGSDLDNKSFAYYGPQADIWNGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAP VGGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSGGVNLVVGSAPTAGADSLLIG TERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYDDVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYN DVSYLSYKDAPCPPEVSQAPGAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQ IPSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGVSGRYDF >Mature_785_residues SPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVTVTTRRREESSQDVPTPMSVVS GTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGLGNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEVL RGPQGTLFGKNTTAGVINISTRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHDL NGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAAAGATLVNGSHRKVNLDNDQHV TVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDGLNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYYF GSDLDNKSFAYYGPQADIWNGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAPV GGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSGGVNLVVGSAPTAGADSLLIGT ERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYDDVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYND VSYLSYKDAPCPPEVSQAPGAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQI PSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGVSGRYDF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 84970; Mature: 84839
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVT CCCCCCCCCCCHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE VTTRRREESSQDVPTPMSVVSGTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGL EEEECCCCCCCCCCCCHHHHCCCEECHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEC GNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEVLRGPQGTLFGKNTTAGVINI CCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCHHHHHHHCCCCCCEECCCCCCEEEEE STRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHD ECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCC LNGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAA CCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEECCHHHH AGATLVNGSHRKVNLDNDQHVTVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDG CCEEEECCCCEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEECCEEEEECCCCCCCC LNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYYFGSDLDNKSFAYYGPQADIW CCCCEECCCCCEECHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC NGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAP CCCCCCCEECCCCCCCCCEECCCEEEEECCEEEECCCCCEECCCCCCCHHCCCEECCCCC VGGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSG CCCCEECCCHHHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEEECCHHHHEEEECCCCCCC GVNLVVGSAPTAGADSLLIGTERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYD CEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCEEEECCEEEEEEEEEEECCCCC DVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYNDVSYLSYKDAPCPPEVSQAP CHHHHHEECCCCCHHHCCCEECCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCC GAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQ CCCCCCCCCCCEEEEHHHHCCCCCCEEEECCCCCCCCEEECCEEECCCCCCCCCCCCCCC IPSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGV CCCEEEEEECCCCCCCCCCCEEEEEEEEHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEC SGRYDF CCCCCC >Mature Secondary Structure SPLNLASPPPPRRLKRLPLALLLAGSASWTHGYAAETETPVPAPAGKTATATSQLETVT CCCCCCCCCCHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE VTTRRREESSQDVPTPMSVVSGTTLETQRVYRIQDLQQLVPSVNVAYMHARQSSVSIRGL EEEECCCCCCCCCCCCHHHHCCCEECHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEC GNNPASDGLEGSVGLYIDNVYLGRPGMAVFDLMDIEQLEVLRGPQGTLFGKNTTAGVINI CCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCHHHHHHHCCCCCCEECCCCCCEEEEE STRAPSFTPERSIETSVGEDGYFQTKGTISGPLNDVLAGRLSAYRTRSDGDIKNEFNGHD ECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCC LNGGSRDGFRAQLLFKPNENFNLRWIGDYNEEDSSAGTRVLYNTGPTINGVNLYSARAAA CCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEECCHHHH AGATLVNGSHRKVNLDNDQHVTVHQGGTSVEANWTLPSDFTLTSVSSYRFWNFTPRNDDG CCEEEECCCCEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEECCEEEEECCCCCCCC LNVPATYNAGVSVEDKQYSQEFRLASPKGEFFDYVLGAYYFGSDLDNKSFAYYGPQADIW CCCCEECCCCCEECHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC NGTPRGALANVNSVGRGHIKTDSFALFAQGTWHLTPRLDFTAGVRGTYEEKNAWVNRDAP CCCCCCCEECCCCCCCCCEECCCEEEEECCEEEECCCCCEECCCCCCCHHCCCEECCCCC VGGAAVTGAAATARRGRTGAYDSGDLNQYSSSPSGLLNLSYRFTDDLLGYATLSHGEKSG CCCCEECCCHHHHCCCCCCCCCCCCCHHHCCCCCCEEEEEEEECCHHHHEEEECCCCCCC GVNLVVGSAPTAGADSLLIGTERANNAELGFKSTLWDRRLQLNANVFWTQVNAYQTNAYD CEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCEEEECCEEEEEEEEEEECCCCC DVNRVQYLTNAGSVRSRGVEFESTVIPLRGLTLNFNGSYNDVSYLSYKDAPCPPEVSQAP CHHHHHEECCCCCHHHCCCEECCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCC GAPASCDLSGHQVVGASKWIGNANGKYEWNLDNGLQPYVTGSYAFRSKAVGTVEDSDYGQ CCCCCCCCCCCEEEEHHHHCCCCCCEEEECCCCCCCCEEECCEEECCCCCCCCCCCCCCC IPSYAVVNLSTGLRGDFNQGQWDVSLWLKNAFDKTYYTTLWTGGNGGYEGLLGTPRTLGV CCCEEEEEECCCCCCCCCCCEEEEEEEEHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEC SGRYDF CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA