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The map label for this gene is yciR [C]

Identifier: 77456420

GI number: 77456420

Start: 232056

End: 233987

Strand: Direct

Name: yciR [C]

Synonym: Pfl01_0192

Alternate gene names: 77456420

Gene position: 232056-233987 (Clockwise)

Preceding gene: 77456417

Following gene: 77456421

Centisome position: 3.6

GC content: 63.04

Gene sequence:

>1932_bases
ATGGACGGCCGAATGTCTGCCACTTACCGCGATGCCTTGCGTGCAGCGCTGCTTTACCTGGTCCTTGCCGTGGTCTGGCT
GCAAGGTACTGGTTATTTATTGAACAGTTTCTTCGATAGCTCTGACGAGTTGCTGCGCTGGCAACTGATCAACGGCTACC
TGTTCGTGGCGCTCAGCGCCGGGTTGATCTTCCTGGCCCGGGCGCGGCTGTTCGAATGCCTGGGCATCGGCGCCCGATTG
CGTGAACGCCAGGCAGATCGCGAACGCCTGCGTCAGGCCGCTGCGGTATTCGATTGCACCCGCGAAGGCGTGCTGGTCAC
GGACCGGCAGGGGCTGATCGTGCACGTCAATCGCGCGTTCATGGAAATCACCGGTTATCAGCGCGATGAAGTCATCGGCC
AGCAGCCCAGCCTGTTCAAGTCCGGGCATCATCCGCCGGGGTTCTATCAAGCGATGTTCGCTTCTTTACAGGCGCGGGAC
GAATGGAGCGGCGAGATCTGGAACCGGCGCAAGAGCGGTGAAATCTACCCGCAATGGCAGACGATCCGGGTCATTCGTGA
CGATGACAACCGGCTCAGCCATTACGTCGCGGTGTTTTCCGACATCAGCGCAATCAAGGATTCCGAACACGAACTCAAGC
ACCTGGCCCACCACGATCCGCTGACTGACCTGCCCAACCGTCTGCTGTTCAGCGACCGCGCCGAACAGGCGCTGGCATCG
GCGCAGACCCACAAGCGCGGCTGCGCGCTGCTGATGATCGATCTGGACCATTTCAAACTGATCAACGACAGTCTTGGCCA
CACTATCGGTGACCGTTTGCTCAAGGCGGTCGCCGCGCGTTTGCAGGCGTTGTTCGGGCCGGGCATCACCCTGGCGCGGC
TGGGCGGCGATGAATTCGCGGTTCTGCTGGAAAGTTGTCCACAGCCGGCACAGGCGGCAGCGCTGGCTCAGCGTATTCTC
GATGCGCTCAAGGAGCCGTTCTGCCTCGACGGCCATGAACTGTTCATCAACGCCAGCCTCGGCATCAGTCTGTTTCCCAG
CGATGCGCTGAGCGCCGAACAGCTGTTGCGCAACGCCGATGCGGCGCTGTTCAAGGCCAAGAGCAGCGGCCGCAATGGCT
ACGCGCTGTACACCGAAGAGCTCACGGCTCACGCCCAGCAGCGGGTCGAAATCGCCTTCGAGTTGCGCCGCGCGCTGGAG
CAGCAGGAACTGCGGGTCTACTACCAACCGGTGCACGATCTGCAAACCAGTCGCCTGATCGGCGTCGAGGCGCTGGTGCG
CTGGGAGCATCCGCAGCGGGGCCTGGTGTCGCCGGCGGAGTTCATCCCGATTGCCGAGCGCACCGGGCTGATCTCGGAGA
TCGACGCCTGGGTCATGCAGCAGGCCTGCCGGCAGATGTGCCAATGGCAGCAGGCCGGGGTGGTGCTGTCGTTTGTCGCG
GTCAACGTGTCCTCGCGGTTATTCGCTCGCCGCGAGTTGTATCAGCAGGTTGCGCAGGTGCTGCACGAGACTGGCCTGGA
TCCGGCTTATCTGGAACTGGAGGTCACCGAAAGCGCGGTGATGGACGATCCGGAAGTCGCGCTGGAGCAGATGCATCGGC
TGCGCGAGCTGGGCATTCGTCTGGCCATCGATGACTTCGGCACCGGTTATTCGTCGTTGCTGCGGCTCAAGCGCCTGCCG
GTGCAGAAGCTCAAGATCGATCAGGGCTTCGTCGCCGGCCTGCCGTGGGACGAGGACGACGCTGCGATCGTCCGGGTGAT
CATCGCCCTGGCCCGCAGCATGGGCATGCAGGTGCATGCCGAGGGCATCGAGCAGGTGGAACAGGCGGCGTTCCTGCTGG
GCCAGGCCTGTGATCTGGGGCAGGGCTACTGGTTTGGGCGGCCGGTCCCGGAAGCGCAAATCGACTGGAACCGGGCGCCC
TTGATCGGTTGA

Upstream 100 bases:

>100_bases
GTTGCATTATCACCAAGCACACAGATAAAACCAGTCGCCCTTTCAGATAAGAGATGGCTGGATGTTTCTTGACCTATAAT
CCCGACATTTTTGTAGGGAC

Downstream 100 bases:

>100_bases
TGAGGGCGTACGGCGGGTTTGCCGGCGGGCAAATCCGCCGCAAACCCTTGCTGCATCACATAATGTTTTCCAGTTATATA
AACATTCTTAAATAGTCTTT

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MDGRMSATYRDALRAALLYLVLAVVWLQGTGYLLNSFFDSSDELLRWQLINGYLFVALSAGLIFLARARLFECLGIGARL
RERQADRERLRQAAAVFDCTREGVLVTDRQGLIVHVNRAFMEITGYQRDEVIGQQPSLFKSGHHPPGFYQAMFASLQARD
EWSGEIWNRRKSGEIYPQWQTIRVIRDDDNRLSHYVAVFSDISAIKDSEHELKHLAHHDPLTDLPNRLLFSDRAEQALAS
AQTHKRGCALLMIDLDHFKLINDSLGHTIGDRLLKAVAARLQALFGPGITLARLGGDEFAVLLESCPQPAQAAALAQRIL
DALKEPFCLDGHELFINASLGISLFPSDALSAEQLLRNADAALFKAKSSGRNGYALYTEELTAHAQQRVEIAFELRRALE
QQELRVYYQPVHDLQTSRLIGVEALVRWEHPQRGLVSPAEFIPIAERTGLISEIDAWVMQQACRQMCQWQQAGVVLSFVA
VNVSSRLFARRELYQQVAQVLHETGLDPAYLELEVTESAVMDDPEVALEQMHRLRELGIRLAIDDFGTGYSSLLRLKRLP
VQKLKIDQGFVAGLPWDEDDAAIVRVIIALARSMGMQVHAEGIEQVEQAAFLLGQACDLGQGYWFGRPVPEAQIDWNRAP
LIG

Sequences:

>Translated_643_residues
MDGRMSATYRDALRAALLYLVLAVVWLQGTGYLLNSFFDSSDELLRWQLINGYLFVALSAGLIFLARARLFECLGIGARL
RERQADRERLRQAAAVFDCTREGVLVTDRQGLIVHVNRAFMEITGYQRDEVIGQQPSLFKSGHHPPGFYQAMFASLQARD
EWSGEIWNRRKSGEIYPQWQTIRVIRDDDNRLSHYVAVFSDISAIKDSEHELKHLAHHDPLTDLPNRLLFSDRAEQALAS
AQTHKRGCALLMIDLDHFKLINDSLGHTIGDRLLKAVAARLQALFGPGITLARLGGDEFAVLLESCPQPAQAAALAQRIL
DALKEPFCLDGHELFINASLGISLFPSDALSAEQLLRNADAALFKAKSSGRNGYALYTEELTAHAQQRVEIAFELRRALE
QQELRVYYQPVHDLQTSRLIGVEALVRWEHPQRGLVSPAEFIPIAERTGLISEIDAWVMQQACRQMCQWQQAGVVLSFVA
VNVSSRLFARRELYQQVAQVLHETGLDPAYLELEVTESAVMDDPEVALEQMHRLRELGIRLAIDDFGTGYSSLLRLKRLP
VQKLKIDQGFVAGLPWDEDDAAIVRVIIALARSMGMQVHAEGIEQVEQAAFLLGQACDLGQGYWFGRPVPEAQIDWNRAP
LIG
>Mature_643_residues
MDGRMSATYRDALRAALLYLVLAVVWLQGTGYLLNSFFDSSDELLRWQLINGYLFVALSAGLIFLARARLFECLGIGARL
RERQADRERLRQAAAVFDCTREGVLVTDRQGLIVHVNRAFMEITGYQRDEVIGQQPSLFKSGHHPPGFYQAMFASLQARD
EWSGEIWNRRKSGEIYPQWQTIRVIRDDDNRLSHYVAVFSDISAIKDSEHELKHLAHHDPLTDLPNRLLFSDRAEQALAS
AQTHKRGCALLMIDLDHFKLINDSLGHTIGDRLLKAVAARLQALFGPGITLARLGGDEFAVLLESCPQPAQAAALAQRIL
DALKEPFCLDGHELFINASLGISLFPSDALSAEQLLRNADAALFKAKSSGRNGYALYTEELTAHAQQRVEIAFELRRALE
QQELRVYYQPVHDLQTSRLIGVEALVRWEHPQRGLVSPAEFIPIAERTGLISEIDAWVMQQACRQMCQWQQAGVVLSFVA
VNVSSRLFARRELYQQVAQVLHETGLDPAYLELEVTESAVMDDPEVALEQMHRLRELGIRLAIDDFGTGYSSLLRLKRLP
VQKLKIDQGFVAGLPWDEDDAAIVRVIIALARSMGMQVHAEGIEQVEQAAFLLGQACDLGQGYWFGRPVPEAQIDWNRAP
LIG

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=539, Percent_Identity=33.0241187384045, Blast_Score=300, Evalue=2e-82,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=31.2354312354312, Blast_Score=236, Evalue=4e-63,
Organism=Escherichia coli, GI226510982, Length=414, Percent_Identity=32.1256038647343, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=37.1308016877637, Blast_Score=156, Evalue=4e-39,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=36.480686695279, Blast_Score=149, Evalue=7e-37,
Organism=Escherichia coli, GI1787055, Length=247, Percent_Identity=33.1983805668016, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=34.468085106383, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=29.8387096774194, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=34.0163934426229, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1788849, Length=463, Percent_Identity=26.7818574514039, Blast_Score=129, Evalue=8e-31,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=30.8016877637131, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788381, Length=543, Percent_Identity=25.2302025782689, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87082096, Length=421, Percent_Identity=25.41567695962, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=37.8048780487805, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=31.3953488372093, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI87081881, Length=326, Percent_Identity=30.0613496932515, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=35.4430379746835, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=37.5, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=31.0734463276836, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=28.021978021978, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI145693134, Length=212, Percent_Identity=28.7735849056604, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1789650, Length=434, Percent_Identity=21.889400921659, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=30.5732484076433, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 72183; Mature: 72183

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGRMSATYRDALRAALLYLVLAVVWLQGTGYLLNSFFDSSDELLRWQLINGYLFVALSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
GLIFLARARLFECLGIGARLRERQADRERLRQAAAVFDCTREGVLVTDRQGLIVHVNRAF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHH
MEITGYQRDEVIGQQPSLFKSGHHPPGFYQAMFASLQARDEWSGEIWNRRKSGEIYPQWQ
HHHCCCCHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCE
TIRVIRDDDNRLSHYVAVFSDISAIKDSEHELKHLAHHDPLTDLPNRLLFSDRAEQALAS
EEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AQTHKRGCALLMIDLDHFKLINDSLGHTIGDRLLKAVAARLQALFGPGITLARLGGDEFA
HHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
VLLESCPQPAQAAALAQRILDALKEPFCLDGHELFINASLGISLFPSDALSAEQLLRNAD
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCCCHHHHHHCCC
AALFKAKSSGRNGYALYTEELTAHAQQRVEIAFELRRALEQQELRVYYQPVHDLQTSRLI
HHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVEALVRWEHPQRGLVSPAEFIPIAERTGLISEIDAWVMQQACRQMCQWQQAGVVLSFVA
HHHHHHHCCCCCCCCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VNVSSRLFARRELYQQVAQVLHETGLDPAYLELEVTESAVMDDPEVALEQMHRLRELGIR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCHHHHHHHHHHHHHCCCE
LAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVIIALARSMGMQVHA
EEEECCCCCHHHHHHHHHCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEHH
EGIEQVEQAAFLLGQACDLGQGYWFGRPVPEAQIDWNRAPLIG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDGRMSATYRDALRAALLYLVLAVVWLQGTGYLLNSFFDSSDELLRWQLINGYLFVALSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
GLIFLARARLFECLGIGARLRERQADRERLRQAAAVFDCTREGVLVTDRQGLIVHVNRAF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHH
MEITGYQRDEVIGQQPSLFKSGHHPPGFYQAMFASLQARDEWSGEIWNRRKSGEIYPQWQ
HHHCCCCHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCE
TIRVIRDDDNRLSHYVAVFSDISAIKDSEHELKHLAHHDPLTDLPNRLLFSDRAEQALAS
EEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AQTHKRGCALLMIDLDHFKLINDSLGHTIGDRLLKAVAARLQALFGPGITLARLGGDEFA
HHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
VLLESCPQPAQAAALAQRILDALKEPFCLDGHELFINASLGISLFPSDALSAEQLLRNAD
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCCCHHHHHHCCC
AALFKAKSSGRNGYALYTEELTAHAQQRVEIAFELRRALEQQELRVYYQPVHDLQTSRLI
HHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVEALVRWEHPQRGLVSPAEFIPIAERTGLISEIDAWVMQQACRQMCQWQQAGVVLSFVA
HHHHHHHCCCCCCCCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VNVSSRLFARRELYQQVAQVLHETGLDPAYLELEVTESAVMDDPEVALEQMHRLRELGIR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCHHHHHHHHHHHHHCCCE
LAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVIIALARSMGMQVHA
EEEECCCCCHHHHHHHHHCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEHH
EGIEQVEQAAFLLGQACDLGQGYWFGRPVPEAQIDWNRAPLIG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]