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The map label for this gene is ydaM [H]

Identifier: 77456418

GI number: 77456418

Start: 229602

End: 230591

Strand: Reverse

Name: ydaM [H]

Synonym: Pfl01_0190

Alternate gene names: 77456418

Gene position: 230591-229602 (Counterclockwise)

Preceding gene: 77456419

Following gene: 77456409

Centisome position: 3.58

GC content: 61.62

Gene sequence:

>990_bases
ATGGTCAACAACAATCAAAAAGACTCATCCCCTCCCCAGTGGCCCGAGGCCGCGCAAACCCTGATGGCATTGATGCACGC
CCAGGGCGAAGTCGCCCGACTGAGCGAACGCGAGCAGCTGTTCAGTTCGCTGCTGGTCAGCGTCAACGCCGTGCTTTGGG
CCTTCAACTGGGAAACCCGTCAGGTGTTGTACGTCAGCCCCGCTTACGAGCGGATCTTCGGTCGTTCCGCCGGCCTGTTG
CTGGCCGACTACAACCAGTGGCGCGACAGCATCTACCCGGATGATCTGGAATACGCCGAACGCAGCCTCGCCGAAGTGCT
GCATAAAGGCGCCGTAGAAGACCGCGAATACCGGATCATCGCCGCCGACGGCCAGGTTCGCTGGATCAGTGACAAGTGCT
TCATCAACCGTCAGGACGAACCAGGGCAACCGGTGATCATCGTCGGCATCGCCGAAGACATCACCGACAAGAAGCAGATG
GAAACCGAGCTCCAGCGCCTGGCCACCACCGACGTGCTGACCCAGAGCAGCAATCGCCGGCACTTCTTCGAATGCGCCCA
CCGGGAATTTGAACAAGCCCGCCTGCAAGGCGCGCAAATGGCGTTCCTGCTGCTGGACATCGATGACTTCAAGGTGATCA
ACGACACCTACGGCCACCCCGAGGGCGACAATGTGCTGCAACGGATCGCCGAATGCGGTCGTGCCTCGCTACGTCGGGGC
GACCTGTTCGGGCGGATTGGCGGTGAGGAATTTGCGGCGGTTTTCCCGGGCTGTGCGCCGGACATGGCGATGCAGGTGGC
CGAACGGTTGCAACGGGAAATTCAGCGGCTGAGCTTCAATCACGCCGATCAGACCTTCGGCATCACCGTCAGCCAGGGCC
TGACCAGCCTCACCCCGGAAGACGAAAGCCTCGACACCCTGTTCGCCCGCGCGGACGCAGCGATGTACGAGGCCAAACGG
CAGGGCAAGAACCGGATCATTTCCGCCTGA

Upstream 100 bases:

>100_bases
TTCACCCCCGATCCCCTATCTCAAAGACACTTCGCCACCCCCGGCGGGCTTTCCCGTGGCCGTTGTCGACTGATCGGCAC
GCCCTTTGAGATTCGTGTCG

Downstream 100 bases:

>100_bases
TTCCCGACCGGATGCGCAATCAAACCGCTATTTGCGCATCCGCATCAGCTCCGGCAGGCCGATCTTGAGCAACCGCGCCG
TGCGGCTCTTCGCCAGCTCC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MVNNNQKDSSPPQWPEAAQTLMALMHAQGEVARLSEREQLFSSLLVSVNAVLWAFNWETRQVLYVSPAYERIFGRSAGLL
LADYNQWRDSIYPDDLEYAERSLAEVLHKGAVEDREYRIIAADGQVRWISDKCFINRQDEPGQPVIIVGIAEDITDKKQM
ETELQRLATTDVLTQSSNRRHFFECAHREFEQARLQGAQMAFLLLDIDDFKVINDTYGHPEGDNVLQRIAECGRASLRRG
DLFGRIGGEEFAAVFPGCAPDMAMQVAERLQREIQRLSFNHADQTFGITVSQGLTSLTPEDESLDTLFARADAAMYEAKR
QGKNRIISA

Sequences:

>Translated_329_residues
MVNNNQKDSSPPQWPEAAQTLMALMHAQGEVARLSEREQLFSSLLVSVNAVLWAFNWETRQVLYVSPAYERIFGRSAGLL
LADYNQWRDSIYPDDLEYAERSLAEVLHKGAVEDREYRIIAADGQVRWISDKCFINRQDEPGQPVIIVGIAEDITDKKQM
ETELQRLATTDVLTQSSNRRHFFECAHREFEQARLQGAQMAFLLLDIDDFKVINDTYGHPEGDNVLQRIAECGRASLRRG
DLFGRIGGEEFAAVFPGCAPDMAMQVAERLQREIQRLSFNHADQTFGITVSQGLTSLTPEDESLDTLFARADAAMYEAKR
QGKNRIISA
>Mature_329_residues
MVNNNQKDSSPPQWPEAAQTLMALMHAQGEVARLSEREQLFSSLLVSVNAVLWAFNWETRQVLYVSPAYERIFGRSAGLL
LADYNQWRDSIYPDDLEYAERSLAEVLHKGAVEDREYRIIAADGQVRWISDKCFINRQDEPGQPVIIVGIAEDITDKKQM
ETELQRLATTDVLTQSSNRRHFFECAHREFEQARLQGAQMAFLLLDIDDFKVINDTYGHPEGDNVLQRIAECGRASLRRG
DLFGRIGGEEFAAVFPGCAPDMAMQVAERLQREIQRLSFNHADQTFGITVSQGLTSLTPEDESLDTLFARADAAMYEAKR
QGKNRIISA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=36.4130434782609, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=32.1637426900585, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=30.9090909090909, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI145693134, Length=181, Percent_Identity=30.3867403314917, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=35, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=27.3743016759777, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788085, Length=197, Percent_Identity=29.9492385786802, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787802, Length=160, Percent_Identity=34.375, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=32.6797385620915, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=27.9503105590062, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=180, Percent_Identity=28.8888888888889, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=34.1176470588235, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 37264; Mature: 37264

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNNNQKDSSPPQWPEAAQTLMALMHAQGEVARLSEREQLFSSLLVSVNAVLWAFNWETR
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
QVLYVSPAYERIFGRSAGLLLADYNQWRDSIYPDDLEYAERSLAEVLHKGAVEDREYRII
EEEEECHHHHHHHCCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
AADGQVRWISDKCFINRQDEPGQPVIIVGIAEDITDKKQMETELQRLATTDVLTQSSNRR
EECCEEEEECCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
HFFECAHREFEQARLQGAQMAFLLLDIDDFKVINDTYGHPEGDNVLQRIAECGRASLRRG
HHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
DLFGRIGGEEFAAVFPGCAPDMAMQVAERLQREIQRLSFNHADQTFGITVSQGLTSLTPE
CHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECEEHHCCCCCCCCC
DESLDTLFARADAAMYEAKRQGKNRIISA
CHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVNNNQKDSSPPQWPEAAQTLMALMHAQGEVARLSEREQLFSSLLVSVNAVLWAFNWETR
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
QVLYVSPAYERIFGRSAGLLLADYNQWRDSIYPDDLEYAERSLAEVLHKGAVEDREYRII
EEEEECHHHHHHHCCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
AADGQVRWISDKCFINRQDEPGQPVIIVGIAEDITDKKQMETELQRLATTDVLTQSSNRR
EECCEEEEECCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
HFFECAHREFEQARLQGAQMAFLLLDIDDFKVINDTYGHPEGDNVLQRIAECGRASLRRG
HHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
DLFGRIGGEEFAAVFPGCAPDMAMQVAERLQREIQRLSFNHADQTFGITVSQGLTSLTPE
CHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECEEHHCCCCCCCCC
DESLDTLFARADAAMYEAKRQGKNRIISA
CHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]