BacMap

Definition	Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession	NC_007492
Length	6,438,405

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The map label for this gene is gabD [H]

Identifier: 77456415

GI number: 77456415

Start: 225316

End: 226758

Strand: Direct

Name: gabD [H]

Synonym: Pfl01_0187

Alternate gene names: 77456415

Gene position: 225316-226758 (Clockwise)

Preceding gene: 77456414

Following gene: 77456416

Centisome position: 3.5

GC content: 61.68

Gene sequence:

>1443_bases
ATGCAGCTTAAAGACACCCAGTTGTTCCGCCAGCAAGCCTTCATCGATGGCGCATGGGTCGACGCGGACAACGGTCAGAC
GATCAAGGTCAACAACCCGGCCACTGGCGAGATTCTGGGCACCGTGCCGAAGATGGGCGCTGCCGAAACCCGCCGCGCCA
TCGAAGCCGCCGACAAGGCGCTTCCGGCCTGGCGTGCACTGACCGCCAAGGAGCGTGCAGGCAAACTGCGTCGCTGGTTC
GAACTGATGATCGAGAACCAGGACGACCTCGCTCGCCTGATGACCCTCGAGCAAGGCAAACCACTGGCCGAAGCCAAGGG
CGAAATCGTTTACGCCGCTTCGTTCATCGAGTGGTTCGCCGAAGAAGCCAAGCGCATCTACGGTGACGTGATTCCGGGCC
ACCAGCCGGACAAGCGCCTGATCGTGATCAAGCAACCGATCGGCGTTACCGCTGCCATCACCCCGTGGAACTTCCCGGCG
GCGATGATCACTCGTAAAGCGGGCCCGGCCCTGGCCGCCGGTTGCACCATGGTGCTCAAGCCTGCTTCGCAAACCCCGTT
CTCTGCATTTGCCCTGGCCGAACTGGCCCAGCGCGCCGGCATCCCCAAAGGTGTGTTCAGCGTGGTGTCCGGCAGCGCCG
GCGACATCGGCAGCGAGCTGACCAGCAACCCGATCGTGCGCAAACTGTCCTTCACCGGTTCGACCGAAATCGGTCGTCAG
CTGATGTCGGAATGCGCCAAGGACATCAAGAAAGTCTCCCTGGAACTGGGCGGCAACGCGCCATTCATCGTGTTCGACGA
CGCGGACCTGGATAAGGCCGTCGAAGGCGCGATCATTTCCAAGTACCGCAACAACGGCCAGACCTGCGTCTGCGCCAACC
GTCTGTACATTCAGGATTCGGTTTACGACGCGTTCGCCGAGAAGCTGAAAGTGGCAGTCGCCAAGCTGAAGATCGGCAAC
GGTCTGGAAGAAGGCACCACCACGGGTCCGCTGATCGACGAGAAAGCCGTGGCCAAGGTGCAAGAGCATATCGCTGACGC
GGTGAGCAAAGGCGCGACCGTTCTGGCCGGCGGCAAGCCGATGGAAGGCAACTTCTTCGAGCCGACCATCCTGACCAACG
TGCCGAAAGACGCTGCCGTGGCCAAGGAAGAAACCTTCGGTCCGCTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCCGAC
GTGATCGCGATGTCGAACGACACCGAGTTCGGTCTGGCCTCGTACTTCTACGCTCGCGACCTGGGCCGTGTGTTCCGTGT
GGCGGAAGCCCTGGAGTACGGCATGGTCGGCGTCAACACCGGGCTGATCTCCAACGAAGTCGCGCCGTTCGGCGGCATCA
AGGCCTCGGGCCTGGGCCGTGAAGGCTCCAAGTACGGCATCGAAGATTACCTGGAAATCAAATACCTCTGCCTGGGCATC
TAA

Upstream 100 bases:

>100_bases
AGCCCGGTGAATGATTTCCCTGACGGCAGCCTTGCGAGGCGCCTTTCTACAATCATAATTTTGCTCCGCGCCTTGCGCGG
TGCTGTTAAGGAAAGCCGAC

Downstream 100 bases:

>100_bases
GCCTCGGTAGAAGATCGCTGTAAACGCAAAGGGCACGAGAGCGCTGTCCCTTTGCGTCGTTTCAAACCGGAATTTTCTCT
GCGGCCGGGAACGCCGTGGC

Product: succinate-semialdehyde dehydrogenase I

Products: NA

Alternate protein names: SSDH [H]

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MQLKDTQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKALPAWRALTAKERAGKLRRWF
ELMIENQDDLARLMTLEQGKPLAEAKGEIVYAASFIEWFAEEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPA
AMITRKAGPALAAGCTMVLKPASQTPFSAFALAELAQRAGIPKGVFSVVSGSAGDIGSELTSNPIVRKLSFTGSTEIGRQ
LMSECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDSVYDAFAEKLKVAVAKLKIGN
GLEEGTTTGPLIDEKAVAKVQEHIADAVSKGATVLAGGKPMEGNFFEPTILTNVPKDAAVAKEETFGPLAPLFRFKDEAD
VIAMSNDTEFGLASYFYARDLGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI

Sequences:

>Translated_480_residues
MQLKDTQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKALPAWRALTAKERAGKLRRWF
ELMIENQDDLARLMTLEQGKPLAEAKGEIVYAASFIEWFAEEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPA
AMITRKAGPALAAGCTMVLKPASQTPFSAFALAELAQRAGIPKGVFSVVSGSAGDIGSELTSNPIVRKLSFTGSTEIGRQ
LMSECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDSVYDAFAEKLKVAVAKLKIGN
GLEEGTTTGPLIDEKAVAKVQEHIADAVSKGATVLAGGKPMEGNFFEPTILTNVPKDAAVAKEETFGPLAPLFRFKDEAD
VIAMSNDTEFGLASYFYARDLGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI
>Mature_480_residues
MQLKDTQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKALPAWRALTAKERAGKLRRWF
ELMIENQDDLARLMTLEQGKPLAEAKGEIVYAASFIEWFAEEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPA
AMITRKAGPALAAGCTMVLKPASQTPFSAFALAELAQRAGIPKGVFSVVSGSAGDIGSELTSNPIVRKLSFTGSTEIGRQ
LMSECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDSVYDAFAEKLKVAVAKLKIGN
GLEEGTTTGPLIDEKAVAKVQEHIADAVSKGATVLAGGKPMEGNFFEPTILTNVPKDAAVAKEETFGPLAPLFRFKDEAD
VIAMSNDTEFGLASYFYARDLGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI

Specific function: Catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate [H]

COG id: COG1012

COG function: function code C; NAD-dependent aldehyde dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldehyde dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4507229, Length=478, Percent_Identity=56.6945606694561, Blast_Score=536, Evalue=1e-152,
Organism=Homo sapiens, GI25777721, Length=491, Percent_Identity=54.989816700611, Blast_Score=525, Evalue=1e-149,
Organism=Homo sapiens, GI21614513, Length=482, Percent_Identity=39.0041493775934, Blast_Score=331, Evalue=8e-91,
Organism=Homo sapiens, GI238814322, Length=478, Percent_Identity=38.9121338912134, Blast_Score=329, Evalue=4e-90,
Organism=Homo sapiens, GI25777730, Length=477, Percent_Identity=37.5262054507338, Blast_Score=307, Evalue=1e-83,
Organism=Homo sapiens, GI153266822, Length=488, Percent_Identity=36.4754098360656, Blast_Score=306, Evalue=4e-83,
Organism=Homo sapiens, GI25777724, Length=475, Percent_Identity=36.4210526315789, Blast_Score=304, Evalue=1e-82,
Organism=Homo sapiens, GI21361176, Length=488, Percent_Identity=36.0655737704918, Blast_Score=301, Evalue=6e-82,
Organism=Homo sapiens, GI115387104, Length=473, Percent_Identity=36.7864693446089, Blast_Score=299, Evalue=5e-81,
Organism=Homo sapiens, GI25777732, Length=482, Percent_Identity=35.6846473029046, Blast_Score=294, Evalue=1e-79,
Organism=Homo sapiens, GI12007648, Length=479, Percent_Identity=32.776617954071, Blast_Score=293, Evalue=3e-79,
Organism=Homo sapiens, GI25777728, Length=419, Percent_Identity=36.7541766109785, Blast_Score=272, Evalue=4e-73,
Organism=Homo sapiens, GI25777726, Length=475, Percent_Identity=33.2631578947368, Blast_Score=261, Evalue=1e-69,
Organism=Homo sapiens, GI188035924, Length=470, Percent_Identity=31.7021276595745, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI25952152, Length=470, Percent_Identity=31.063829787234, Blast_Score=236, Evalue=4e-62,
Organism=Homo sapiens, GI310128103, Length=470, Percent_Identity=31.7021276595745, Blast_Score=236, Evalue=4e-62,
Organism=Homo sapiens, GI310128093, Length=469, Percent_Identity=31.9829424307036, Blast_Score=236, Evalue=5e-62,
Organism=Homo sapiens, GI310128091, Length=469, Percent_Identity=30.4904051172708, Blast_Score=216, Evalue=5e-56,
Organism=Homo sapiens, GI11095441, Length=472, Percent_Identity=27.7542372881356, Blast_Score=207, Evalue=2e-53,
Organism=Homo sapiens, GI301500698, Length=279, Percent_Identity=34.4086021505376, Blast_Score=190, Evalue=3e-48,
Organism=Homo sapiens, GI310128089, Length=323, Percent_Identity=34.984520123839, Blast_Score=186, Evalue=5e-47,
Organism=Homo sapiens, GI223972651, Length=472, Percent_Identity=29.2372881355932, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI310128097, Length=250, Percent_Identity=38.4, Blast_Score=171, Evalue=2e-42,
Organism=Homo sapiens, GI310128095, Length=284, Percent_Identity=34.5070422535211, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI310128087, Length=469, Percent_Identity=26.0127931769723, Blast_Score=144, Evalue=3e-34,
Organism=Homo sapiens, GI206597441, Length=426, Percent_Identity=26.9953051643192, Blast_Score=136, Evalue=5e-32,
Organism=Homo sapiens, GI206597439, Length=426, Percent_Identity=26.9953051643192, Blast_Score=136, Evalue=5e-32,
Organism=Homo sapiens, GI22907049, Length=426, Percent_Identity=26.9953051643192, Blast_Score=136, Evalue=5e-32,
Organism=Homo sapiens, GI4502043, Length=424, Percent_Identity=27.3584905660377, Blast_Score=132, Evalue=7e-31,
Organism=Homo sapiens, GI238814371, Length=424, Percent_Identity=27.3584905660377, Blast_Score=132, Evalue=7e-31,
Organism=Homo sapiens, GI73466520, Length=332, Percent_Identity=27.1084337349398, Blast_Score=132, Evalue=9e-31,
Organism=Homo sapiens, GI4557303, Length=332, Percent_Identity=27.1084337349398, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI238859541, Length=431, Percent_Identity=28.0742459396752, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI25777736, Length=431, Percent_Identity=28.0742459396752, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI25777734, Length=431, Percent_Identity=28.0742459396752, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI71773324, Length=360, Percent_Identity=28.3333333333333, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI73695881, Length=334, Percent_Identity=28.1437125748503, Blast_Score=130, Evalue=3e-30,
Organism=Homo sapiens, GI73695879, Length=334, Percent_Identity=28.1437125748503, Blast_Score=130, Evalue=3e-30,
Organism=Homo sapiens, GI223972653, Length=472, Percent_Identity=25.4237288135593, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI310128099, Length=235, Percent_Identity=26.8085106382979, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI310128101, Length=235, Percent_Identity=26.8085106382979, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI1789015, Length=482, Percent_Identity=81.7427385892116, Blast_Score=818, Evalue=0.0,
Organism=Escherichia coli, GI1787684, Length=468, Percent_Identity=38.2478632478632, Blast_Score=338, Evalue=5e-94,
Organism=Escherichia coli, GI1786504, Length=479, Percent_Identity=35.4906054279749, Blast_Score=295, Evalue=4e-81,
Organism=Escherichia coli, GI1787715, Length=476, Percent_Identity=37.6050420168067, Blast_Score=294, Evalue=8e-81,
Organism=Escherichia coli, GI87081896, Length=495, Percent_Identity=33.9393939393939, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI1787558, Length=472, Percent_Identity=34.5338983050847, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI87081926, Length=445, Percent_Identity=33.0337078651685, Blast_Score=260, Evalue=1e-70,
Organism=Escherichia coli, GI87082295, Length=485, Percent_Identity=32.9896907216495, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1788042, Length=465, Percent_Identity=32.0430107526882, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI1787250, Length=454, Percent_Identity=29.5154185022026, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1787653, Length=457, Percent_Identity=25.164113785558, Blast_Score=100, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17534119, Length=465, Percent_Identity=45.3763440860215, Blast_Score=420, Evalue=1e-118,
Organism=Caenorhabditis elegans, GI133930964, Length=489, Percent_Identity=41.7177914110429, Blast_Score=353, Evalue=1e-97,
Organism=Caenorhabditis elegans, GI17562198, Length=485, Percent_Identity=37.9381443298969, Blast_Score=312, Evalue=3e-85,
Organism=Caenorhabditis elegans, GI25144435, Length=474, Percent_Identity=36.4978902953587, Blast_Score=303, Evalue=9e-83,
Organism=Caenorhabditis elegans, GI25143876, Length=481, Percent_Identity=33.8877338877339, Blast_Score=278, Evalue=5e-75,
Organism=Caenorhabditis elegans, GI25143874, Length=480, Percent_Identity=33.9583333333333, Blast_Score=278, Evalue=5e-75,
Organism=Caenorhabditis elegans, GI32564736, Length=418, Percent_Identity=37.0813397129187, Blast_Score=276, Evalue=1e-74,
Organism=Caenorhabditis elegans, GI71995606, Length=478, Percent_Identity=33.0543933054393, Blast_Score=254, Evalue=6e-68,
Organism=Caenorhabditis elegans, GI17551164, Length=459, Percent_Identity=32.244008714597, Blast_Score=229, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI115534176, Length=481, Percent_Identity=32.016632016632, Blast_Score=228, Evalue=4e-60,
Organism=Caenorhabditis elegans, GI71995613, Length=416, Percent_Identity=32.9326923076923, Blast_Score=223, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI71986308, Length=472, Percent_Identity=27.1186440677966, Blast_Score=187, Evalue=9e-48,
Organism=Caenorhabditis elegans, GI32566756, Length=336, Percent_Identity=28.5714285714286, Blast_Score=142, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI25146391, Length=332, Percent_Identity=28.6144578313253, Blast_Score=142, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI25146394, Length=332, Percent_Identity=28.6144578313253, Blast_Score=142, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI17564084, Length=437, Percent_Identity=26.7734553775744, Blast_Score=139, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17534447, Length=474, Percent_Identity=27.4261603375527, Blast_Score=135, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI32564151, Length=428, Percent_Identity=27.1028037383178, Blast_Score=128, Evalue=6e-30,
Organism=Caenorhabditis elegans, GI115532534, Length=397, Percent_Identity=27.455919395466, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI71990744, Length=313, Percent_Identity=26.1980830670927, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6319478, Length=482, Percent_Identity=51.2448132780083, Blast_Score=501, Evalue=1e-143,
Organism=Saccharomyces cerevisiae, GI6320917, Length=470, Percent_Identity=37.2340425531915, Blast_Score=317, Evalue=2e-87,
Organism=Saccharomyces cerevisiae, GI6324950, Length=465, Percent_Identity=35.4838709677419, Blast_Score=313, Evalue=5e-86,
Organism=Saccharomyces cerevisiae, GI6323821, Length=477, Percent_Identity=33.9622641509434, Blast_Score=275, Evalue=2e-74,
Organism=Saccharomyces cerevisiae, GI6323822, Length=483, Percent_Identity=33.9544513457557, Blast_Score=274, Evalue=2e-74,
Organism=Saccharomyces cerevisiae, GI6325196, Length=468, Percent_Identity=33.7606837606838, Blast_Score=273, Evalue=4e-74,
Organism=Saccharomyces cerevisiae, GI6321828, Length=483, Percent_Identity=26.2939958592132, Blast_Score=181, Evalue=3e-46,
Organism=Saccharomyces cerevisiae, GI6321826, Length=464, Percent_Identity=25, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6323757, Length=329, Percent_Identity=27.0516717325228, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI281362580, Length=481, Percent_Identity=53.4303534303534, Blast_Score=533, Evalue=1e-151,
Organism=Drosophila melanogaster, GI62472918, Length=481, Percent_Identity=53.4303534303534, Blast_Score=533, Evalue=1e-151,
Organism=Drosophila melanogaster, GI62472926, Length=481, Percent_Identity=53.4303534303534, Blast_Score=533, Evalue=1e-151,
Organism=Drosophila melanogaster, GI62472936, Length=481, Percent_Identity=53.4303534303534, Blast_Score=533, Evalue=1e-151,
Organism=Drosophila melanogaster, GI21356737, Length=481, Percent_Identity=53.4303534303534, Blast_Score=533, Evalue=1e-151,
Organism=Drosophila melanogaster, GI24650465, Length=475, Percent_Identity=37.4736842105263, Blast_Score=326, Evalue=2e-89,
Organism=Drosophila melanogaster, GI24585660, Length=474, Percent_Identity=36.0759493670886, Blast_Score=311, Evalue=9e-85,
Organism=Drosophila melanogaster, GI20129399, Length=475, Percent_Identity=36.2105263157895, Blast_Score=301, Evalue=7e-82,
Organism=Drosophila melanogaster, GI24666674, Length=485, Percent_Identity=30.7216494845361, Blast_Score=210, Evalue=2e-54,
Organism=Drosophila melanogaster, GI24638876, Length=471, Percent_Identity=27.6008492569002, Blast_Score=183, Evalue=2e-46,
Organism=Drosophila melanogaster, GI24638878, Length=471, Percent_Identity=27.6008492569002, Blast_Score=183, Evalue=2e-46,
Organism=Drosophila melanogaster, GI45552499, Length=340, Percent_Identity=26.7647058823529, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI281360303, Length=340, Percent_Identity=26.7647058823529, Blast_Score=126, Evalue=4e-29,
Organism=Drosophila melanogaster, GI281360299, Length=340, Percent_Identity=26.7647058823529, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI281360297, Length=340, Percent_Identity=26.7647058823529, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI281360295, Length=340, Percent_Identity=26.7647058823529, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24586250, Length=340, Percent_Identity=26.7647058823529, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI281360301, Length=340, Percent_Identity=26.7647058823529, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24668425, Length=434, Percent_Identity=27.6497695852535, Blast_Score=125, Evalue=9e-29,
Organism=Drosophila melanogaster, GI24668417, Length=434, Percent_Identity=27.6497695852535, Blast_Score=125, Evalue=9e-29,
Organism=Drosophila melanogaster, GI24668413, Length=434, Percent_Identity=27.6497695852535, Blast_Score=125, Evalue=9e-29,
Organism=Drosophila melanogaster, GI28571806, Length=331, Percent_Identity=22.9607250755287, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571798, Length=331, Percent_Identity=22.9607250755287, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571796, Length=331, Percent_Identity=22.9607250755287, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571794, Length=331, Percent_Identity=22.9607250755287, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571802, Length=331, Percent_Identity=22.9607250755287, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571800, Length=331, Percent_Identity=22.9607250755287, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28574525, Length=450, Percent_Identity=22.6666666666667, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281360293, Length=160, Percent_Identity=26.875, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016161
- InterPro:   IPR016163
- InterPro:   IPR016160
- InterPro:   IPR016162
- InterPro:   IPR015590
- InterPro:   IPR010102 [H]

Pfam domain/function: PF00171 Aldedh [H]

EC number: =1.2.1.79 [H]

Molecular weight: Translated: 51609; Mature: 51609

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU ; PS00070 ALDEHYDE_DEHYDR_CYS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLKDTQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKA
CCCCHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHH
LPAWRALTAKERAGKLRRWFELMIENQDDLARLMTLEQGKPLAEAKGEIVYAASFIEWFA
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCEEEHHHHHHHHH
EEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK
HHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHCCCCHHHHCCEEEEE
PASQTPFSAFALAELAQRAGIPKGVFSVVSGSAGDIGSELTSNPIVRKLSFTGSTEIGRQ
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCHHHHHH
LMSECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDS
HHHHHHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECEEEEEHH
VYDAFAEKLKVAVAKLKIGNGLEEGTTTGPLIDEKAVAKVQEHIADAVSKGATVLAGGKP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCC
MEGNFFEPTILTNVPKDAAVAKEETFGPLAPLFRFKDEADVIAMSNDTEFGLASYFYARD
CCCCCCCCHHCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
LGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI
HHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECC
>Mature Secondary Structure
MQLKDTQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKA
CCCCHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHH
LPAWRALTAKERAGKLRRWFELMIENQDDLARLMTLEQGKPLAEAKGEIVYAASFIEWFA
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCEEEHHHHHHHHH
EEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK
HHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHCCCCHHHHCCEEEEE
PASQTPFSAFALAELAQRAGIPKGVFSVVSGSAGDIGSELTSNPIVRKLSFTGSTEIGRQ
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCHHHHHH
LMSECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDS
HHHHHHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECEEEEEHH
VYDAFAEKLKVAVAKLKIGNGLEEGTTTGPLIDEKAVAKVQEHIADAVSKGATVLAGGKP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCC
MEGNFFEPTILTNVPKDAAVAKEETFGPLAPLFRFKDEADVIAMSNDTEFGLASYFYARD
CCCCCCCCHHCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
LGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI
HHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8297211; 9205837; 9278503 [H]