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The map label for this gene is fecI [H]

Identifier: 77456351

GI number: 77456351

Start: 131823

End: 132371

Strand: Reverse

Name: fecI [H]

Synonym: Pfl01_0123

Alternate gene names: 77456351

Gene position: 132371-131823 (Counterclockwise)

Preceding gene: 77456353

Following gene: 77456350

Centisome position: 2.06

GC content: 57.74

Gene sequence:

>549_bases
ATGACAATGCGACTAATTATCATTTGTGACGTTCGGGCTGTCGCGTTCATGTCCTCATCTGAGTTTGCAGTACAGGCGCT
TTACAGTAGTCATCACGGCTGGCTCAACGGCTGGTTGCGCGCGCGACTGGGCAATGCCGCCGATGCGGCGGATCTGGCTC
AGGACACGTTCGTGCGTTTGCTGCAACGCACCGAGCGTCTGGAACTCAAGGCACCTCGCGCATTCTTGCGCACGGTTGCC
CGGGGTTTGGTGATAGATCATTGGCGCCGTGAAGAAATTGAGCGCGCCTATCTGGAAACCATCGCCCATTTGCCTGAAGC
CGAAACCCCAAGTGGCGAATCCCGCGCATTGGTGATCGAACTGCTCGAGGGCATTGCCCGCATGCTTGAAGGCCTGAAGC
CGAAAGTGCGTCAGGCATTTCTGCTGGCGCAGTGCGAAGGTTTGACCCACAAGCAGATCGCCGAGCAGATGGGACTGTCT
CTGCGCTCGGTAGAACGCTACGTCGCCGACGCCCTGTTTCACTGCTACGTGCTGCGGTACGAAAACTGA

Upstream 100 bases:

>100_bases
GCATTTCTGGCAGATTCCCGCCGAACGGCGTGCCAGAGCGTTCGCTTGTCATTTTTTGATGACTGTTTTGCAGCGCCGGT
TGCAAATTCTGTAACCCTTG

Downstream 100 bases:

>100_bases
TGCCAGTGGATAACCTCTCGCTTGGCCGTCGCGCCGAGCCACCGCAACAGGTCGTCCGACAGGCCATTCACTGGCTCTTG
CGCCTGCGCAACAACCATGG

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTMRLIIICDVRAVAFMSSSEFAVQALYSSHHGWLNGWLRARLGNAADAADLAQDTFVRLLQRTERLELKAPRAFLRTVA
RGLVIDHWRREEIERAYLETIAHLPEAETPSGESRALVIELLEGIARMLEGLKPKVRQAFLLAQCEGLTHKQIAEQMGLS
LRSVERYVADALFHCYVLRYEN

Sequences:

>Translated_182_residues
MTMRLIIICDVRAVAFMSSSEFAVQALYSSHHGWLNGWLRARLGNAADAADLAQDTFVRLLQRTERLELKAPRAFLRTVA
RGLVIDHWRREEIERAYLETIAHLPEAETPSGESRALVIELLEGIARMLEGLKPKVRQAFLLAQCEGLTHKQIAEQMGLS
LRSVERYVADALFHCYVLRYEN
>Mature_181_residues
TMRLIIICDVRAVAFMSSSEFAVQALYSSHHGWLNGWLRARLGNAADAADLAQDTFVRLLQRTERLELKAPRAFLRTVAR
GLVIDHWRREEIERAYLETIAHLPEAETPSGESRALVIELLEGIARMLEGLKPKVRQAFLLAQCEGLTHKQIAEQMGLSL
RSVERYVADALFHCYVLRYEN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=164, Percent_Identity=43.2926829268293, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20748; Mature: 20617

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMRLIIICDVRAVAFMSSSEFAVQALYSSHHGWLNGWLRARLGNAADAADLAQDTFVRL
CCEEEEEEECHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
LQRTERLELKAPRAFLRTVARGLVIDHWRREEIERAYLETIAHLPEAETPSGESRALVIE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LLEGIARMLEGLKPKVRQAFLLAQCEGLTHKQIAEQMGLSLRSVERYVADALFHCYVLRY
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEE
EN
CC
>Mature Secondary Structure 
TMRLIIICDVRAVAFMSSSEFAVQALYSSHHGWLNGWLRARLGNAADAADLAQDTFVRL
CEEEEEEECHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
LQRTERLELKAPRAFLRTVARGLVIDHWRREEIERAYLETIAHLPEAETPSGESRALVIE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LLEGIARMLEGLKPKVRQAFLLAQCEGLTHKQIAEQMGLSLRSVERYVADALFHCYVLRY
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEE
EN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]