Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 77456346

GI number: 77456346

Start: 119603

End: 120823

Strand: Direct

Name: yfdE [H]

Synonym: Pfl01_0118

Alternate gene names: 77456346

Gene position: 119603-120823 (Clockwise)

Preceding gene: 77456345

Following gene: 77456352

Centisome position: 1.86

GC content: 60.2

Gene sequence:

>1221_bases
ATGGGCGCGCTGTCGCATCTACGGGTACTGGATTTATCGCGAGTGCTGGCCGGCCCATGGGCTGGTCAGATTCTGGCTGA
TCTTGGGGCGGAAGTGATCAAGGTCGAGCGCCCGGGTAATGGTGACGACACTCGCGCCTGGGGGCCGCCCTTCCTTAAAG
ACGCCTATGGCGAGAACACCAGCGAGGCGGCTTACTACTTGTCGGCCAACCGCAACAAGCAATCGGTGACGATCGACTTC
ACGCGTCCCGAAGGTCAGAAGCTGGTTCGGGAGCTGGCAGCCAAGTCCGACATCCTGATCGAGAACTTCAAGGTGGGTGG
CCTGGCGGCTTACGGCCTGGATTACGAGTCGCTGAAGGCAATCAATCCAGATCTGATCTATTGCTCGATCACCGGTTTCG
GTCAAACCGGACCGTATGCCAAGCGTGCGGGTTATGACTTCATGATTCAGGGTCTCGGCGGGCTCATGAGTCTGACCGGG
CGACCCGAGGGTGATGAGGGGGCCGGGCCGGTGAAAGTGGGTGTGGCGCTGACCGATATCCTGACGGGCCTGTATTCGAC
CGTGGCGATCCTGGCGGCGCTGGCTCATCGTGATCACGATGGCGGTGGGCAACATATCGACATGGCGCTGCTGGATGTAC
AGGTGGCATGTCTGGCCAACCAGGCGATGAATTACCTGACGACGGGCACTGCGCCGAAGCGGCTGGGGAATGCGCATCCG
AACATCGTGCCGTATCAGGATTTTCCTACGGCTGACGGCGACTTCATTCTCACGGTGGGCAACGACGGGCAGTTCCGTAA
ATTTGCCGAAGTGGCGGGGCAGCCGCAGTGGGCGGACGATCCGCGTTTTGCGACTAATAAGCTGCGAGTGGCGAACCGGG
CTGTTCTAATTCCGTTGATCCGTCAGGCAACAGTCTTCAAGACGACCGCTGAGTGGGTGGCTCAGCTGGAGCAGGCGGGT
GTACCGTGTGGACCGATCAATGATCTGTCACAGGTGTTCGAGGATCCACAGGTGAAGTCTCGCGGGTTGGCGATTGAGCT
GCCTCACGCGCTGGCGGGGATGGTGCCGCAGGTGGCCAGTCCGATTAGGTTGTCGCGGACGCCTGTTGAGTATCGCCATG
CGCCTCCTTTGTTGGGCGAGCATACGTTGGAGGTTTTGCAGCGGGTGCTGGGTCTTGGAGCTGGAGCAGTGGCTGCGATG
AAAGAGGATGGAGTGCTCTGA

Upstream 100 bases:

>100_bases
GAAGTGGTGAATACCTATGAAGGTACTCACGACGTTCACGCGCTGATCCTCGGTCGTGCGCAGACCGGCCTGCAGGCGTT
CTATTAACAGGAGAGCGACC

Downstream 100 bases:

>100_bases
AAGTTCTCTCTATAAAGAAGGGGTGCTGAATCCTTCTTTTATATAGAGGGTCTTGAGTGTTTTTTGGCCTGTCCGCAACT
TATTGAAAGAAAAGCGAAAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MGALSHLRVLDLSRVLAGPWAGQILADLGAEVIKVERPGNGDDTRAWGPPFLKDAYGENTSEAAYYLSANRNKQSVTIDF
TRPEGQKLVRELAAKSDILIENFKVGGLAAYGLDYESLKAINPDLIYCSITGFGQTGPYAKRAGYDFMIQGLGGLMSLTG
RPEGDEGAGPVKVGVALTDILTGLYSTVAILAALAHRDHDGGGQHIDMALLDVQVACLANQAMNYLTTGTAPKRLGNAHP
NIVPYQDFPTADGDFILTVGNDGQFRKFAEVAGQPQWADDPRFATNKLRVANRAVLIPLIRQATVFKTTAEWVAQLEQAG
VPCGPINDLSQVFEDPQVKSRGLAIELPHALAGMVPQVASPIRLSRTPVEYRHAPPLLGEHTLEVLQRVLGLGAGAVAAM
KEDGVL

Sequences:

>Translated_406_residues
MGALSHLRVLDLSRVLAGPWAGQILADLGAEVIKVERPGNGDDTRAWGPPFLKDAYGENTSEAAYYLSANRNKQSVTIDF
TRPEGQKLVRELAAKSDILIENFKVGGLAAYGLDYESLKAINPDLIYCSITGFGQTGPYAKRAGYDFMIQGLGGLMSLTG
RPEGDEGAGPVKVGVALTDILTGLYSTVAILAALAHRDHDGGGQHIDMALLDVQVACLANQAMNYLTTGTAPKRLGNAHP
NIVPYQDFPTADGDFILTVGNDGQFRKFAEVAGQPQWADDPRFATNKLRVANRAVLIPLIRQATVFKTTAEWVAQLEQAG
VPCGPINDLSQVFEDPQVKSRGLAIELPHALAGMVPQVASPIRLSRTPVEYRHAPPLLGEHTLEVLQRVLGLGAGAVAAM
KEDGVL
>Mature_405_residues
GALSHLRVLDLSRVLAGPWAGQILADLGAEVIKVERPGNGDDTRAWGPPFLKDAYGENTSEAAYYLSANRNKQSVTIDFT
RPEGQKLVRELAAKSDILIENFKVGGLAAYGLDYESLKAINPDLIYCSITGFGQTGPYAKRAGYDFMIQGLGGLMSLTGR
PEGDEGAGPVKVGVALTDILTGLYSTVAILAALAHRDHDGGGQHIDMALLDVQVACLANQAMNYLTTGTAPKRLGNAHPN
IVPYQDFPTADGDFILTVGNDGQFRKFAEVAGQPQWADDPRFATNKLRVANRAVLIPLIRQATVFKTTAEWVAQLEQAGV
PCGPINDLSQVFEDPQVKSRGLAIELPHALAGMVPQVASPIRLSRTPVEYRHAPPLLGEHTLEVLQRVLGLGAGAVAAMK
EDGVL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=45.1612903225806, Blast_Score=356, Evalue=2e-98,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=42.4242424242424, Blast_Score=342, Evalue=4e-94,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=39.7022332506204, Blast_Score=298, Evalue=6e-81,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=38.6946386946387, Blast_Score=290, Evalue=1e-78,
Organism=Homo sapiens, GI266456254, Length=407, Percent_Identity=26.5356265356265, Blast_Score=127, Evalue=3e-29,
Organism=Homo sapiens, GI42794625, Length=407, Percent_Identity=26.5356265356265, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI266458393, Length=266, Percent_Identity=30.8270676691729, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI266458397, Length=266, Percent_Identity=30.8270676691729, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=33.5526315789474, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=33.5526315789474, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI87082093, Length=364, Percent_Identity=35.7142857142857, Blast_Score=251, Evalue=8e-68,
Organism=Escherichia coli, GI1788717, Length=429, Percent_Identity=31.2354312354312, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1786222, Length=350, Percent_Identity=24, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=333, Percent_Identity=26.4264264264264, Blast_Score=89, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=226, Percent_Identity=28.3185840707965, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=46.6501240694789, Blast_Score=352, Evalue=3e-97,
Organism=Drosophila melanogaster, GI24585488, Length=373, Percent_Identity=27.8820375335121, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43413; Mature: 43282

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALSHLRVLDLSRVLAGPWAGQILADLGAEVIKVERPGNGDDTRAWGPPFLKDAYGENT
CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCC
SEAAYYLSANRNKQSVTIDFTRPEGQKLVRELAAKSDILIENFKVGGLAAYGLDYESLKA
CCEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCEEEECCCHHHHHC
INPDLIYCSITGFGQTGPYAKRAGYDFMIQGLGGLMSLTGRPEGDEGAGPVKVGVALTDI
CCCCEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHH
LTGLYSTVAILAALAHRDHDGGGQHIDMALLDVQVACLANQAMNYLTTGTAPKRLGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
NIVPYQDFPTADGDFILTVGNDGQFRKFAEVAGQPQWADDPRFATNKLRVANRAVLIPLI
CEECCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHH
RQATVFKTTAEWVAQLEQAGVPCGPINDLSQVFEDPQVKSRGLAIELPHALAGMVPQVAS
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHCCCEEECCHHHHHHHHHHCC
PIRLSRTPVEYRHAPPLLGEHTLEVLQRVLGLGAGAVAAMKEDGVL
CCEECCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
GALSHLRVLDLSRVLAGPWAGQILADLGAEVIKVERPGNGDDTRAWGPPFLKDAYGENT
CCHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCC
SEAAYYLSANRNKQSVTIDFTRPEGQKLVRELAAKSDILIENFKVGGLAAYGLDYESLKA
CCEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCEEEECCCHHHHHC
INPDLIYCSITGFGQTGPYAKRAGYDFMIQGLGGLMSLTGRPEGDEGAGPVKVGVALTDI
CCCCEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHH
LTGLYSTVAILAALAHRDHDGGGQHIDMALLDVQVACLANQAMNYLTTGTAPKRLGNAHP
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
NIVPYQDFPTADGDFILTVGNDGQFRKFAEVAGQPQWADDPRFATNKLRVANRAVLIPLI
CEECCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHH
RQATVFKTTAEWVAQLEQAGVPCGPINDLSQVFEDPQVKSRGLAIELPHALAGMVPQVAS
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHCCCEEECCHHHHHHHHHHCC
PIRLSRTPVEYRHAPPLLGEHTLEVLQRVLGLGAGAVAAMKEDGVL
CCEECCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]