Click here to switch to the map view.

The map label for this gene is cc4 [H]

Identifier: 77456281

GI number: 77456281

Start: 58977

End: 59588

Strand: Reverse

Name: cc4 [H]

Synonym: Pfl01_0053

Alternate gene names: 77456281

Gene position: 59588-58977 (Counterclockwise)

Preceding gene: 77456282

Following gene: 77456280

Centisome position: 0.93

GC content: 62.09

Gene sequence:

>612_bases
ATGAACAAACTGATCGTGAGTCTGCTGTTGACCGTGGGAATCTCAGGCTTCGCCCATGCTTCCGGTGATGCAGCCGCAGG
CCAGGCAAAAGCCGCCGTATGCGGCGCCTGCCATGGCCCGGATGGCAACAGCATGGCGCCAAACTTTCCAAAGCTGGCCG
GACAGGGTGAACGCTACCTGACCAAGCAATTGCACGACATCAAGTCGGGCAAGCGCACCGTTCTGGAAATGACCGGCCTG
CTGACCAACCTGAGCGATCAGGACCTGGCCGATATCGCCGCCTACTTCGCCAGCCAGAAAGGCAGCGTCGGCGCCGCCGA
TCCGAAGATCGTCGCTCGCGGTGAAGCCCTGTTCCGTGGCGGCAACCTCGAGAAAGGCCTGCCAGCCTGCACTGGTTGCC
ACTCGCCGAACGGTGCCGGCAACGCAGCTGCCGGCTTCCCGCACCTGGGTGGCCAACACGCTCAGTACATCGCCAAGCAA
CTGACCGATTTCCGCAAGGAAGAAGCCGGCCGCAACAACGACGGCGACGCGATGACCATGCGTACCATCGCCCGCAAGCT
GAGCGACGAAGACATCGCGGCAGTCTCCAGCTACATTCAGGGTCTGCACTAA

Upstream 100 bases:

>100_bases
TGGACTGCAGTGCCGAGGATTACCAGGCCCTCATCCTCTGGATGAGCGAGAGTAAGCCCGGTCCATAACTCTTAACCCTT
AGCCGTAGTTGGATTAGCTG

Downstream 100 bases:

>100_bases
GACATGCGATTCGAGCGGTGCGTGCAATGGCCAACGCCTGCCACGTTAACGCTCGATTAATCCGTCGCAGGAAGTATAAA
AAGGGTGGCTTTGGCCGCCC

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MNKLIVSLLLTVGISGFAHASGDAAAGQAKAAVCGACHGPDGNSMAPNFPKLAGQGERYLTKQLHDIKSGKRTVLEMTGL
LTNLSDQDLADIAAYFASQKGSVGAADPKIVARGEALFRGGNLEKGLPACTGCHSPNGAGNAAAGFPHLGGQHAQYIAKQ
LTDFRKEEAGRNNDGDAMTMRTIARKLSDEDIAAVSSYIQGLH

Sequences:

>Translated_203_residues
MNKLIVSLLLTVGISGFAHASGDAAAGQAKAAVCGACHGPDGNSMAPNFPKLAGQGERYLTKQLHDIKSGKRTVLEMTGL
LTNLSDQDLADIAAYFASQKGSVGAADPKIVARGEALFRGGNLEKGLPACTGCHSPNGAGNAAAGFPHLGGQHAQYIAKQ
LTDFRKEEAGRNNDGDAMTMRTIARKLSDEDIAAVSSYIQGLH
>Mature_203_residues
MNKLIVSLLLTVGISGFAHASGDAAAGQAKAAVCGACHGPDGNSMAPNFPKLAGQGERYLTKQLHDIKSGKRTVLEMTGL
LTNLSDQDLADIAAYFASQKGSVGAADPKIVARGEALFRGGNLEKGLPACTGCHSPNGAGNAAAGFPHLGGQHAQYIAKQ
LTDFRKEEAGRNNDGDAMTMRTIARKLSDEDIAAVSSYIQGLH

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 21019; Mature: 21019

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLIVSLLLTVGISGFAHASGDAAAGQAKAAVCGACHGPDGNSMAPNFPKLAGQGERYL
CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHH
TKQLHDIKSGKRTVLEMTGLLTNLSDQDLADIAAYFASQKGSVGAADPKIVARGEALFRG
HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHCC
GNLEKGLPACTGCHSPNGAGNAAAGFPHLGGQHAQYIAKQLTDFRKEEAGRNNDGDAMTM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
RTIARKLSDEDIAAVSSYIQGLH
HHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKLIVSLLLTVGISGFAHASGDAAAGQAKAAVCGACHGPDGNSMAPNFPKLAGQGERYL
CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHH
TKQLHDIKSGKRTVLEMTGLLTNLSDQDLADIAAYFASQKGSVGAADPKIVARGEALFRG
HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHCC
GNLEKGLPACTGCHSPNGAGNAAAGFPHLGGQHAQYIAKQLTDFRKEEAGRNNDGDAMTM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
RTIARKLSDEDIAAVSSYIQGLH
HHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8026750; 9032080 [H]