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The map label for this gene is rimN [H]

Identifier: 77456248

GI number: 77456248

Start: 22437

End: 22994

Strand: Direct

Name: rimN [H]

Synonym: Pfl01_0020

Alternate gene names: 77456248

Gene position: 22437-22994 (Clockwise)

Preceding gene: 77456247

Following gene: 77456250

Centisome position: 0.35

GC content: 63.08

Gene sequence:

>558_bases
ATGGTCAACAGTTGGCGTGTGCAACAAGCCGCACGAGAGATTCGCGCCGGGGCGGTGATTGCCTATCCAACCGAAGCCGT
CTGGGGGCTGGGGTGCGATCCTTGGAATGAAGAAGCGGTGGATCGCCTGTTGGCGATCAAGAACCGTTCGGTGGACAAGG
GCTTGATCCTGGTCGCCGACAACATTCGTCAGTTCGATTTTCTGTTCGAGGATTTCCCCCAGGACTGGATCGACCGCATG
GCCAGCACGTGGCCGGGTCCGAACACCTGGCTGGTGCCGCACCAGAACCTGCTGCCGGAATGGGTGACCGGGGTGCATGA
CACCGTGGCGCTGCGGGTCAGCGATCATCCGCAGGTGCGGGATCTGTGCTCGCTGGTGGGACCGTTGATTTCGACGTCGG
CCAACCCACAAGGGCGGCCTGCGGCGCGAACGCGCTTGCGGGTCGAGCAGTATTTCCGTGGTCAGGTCGATCTGGTGCTC
GGCGGAGCGCTTGGCGGTCGCAAGAATCCGAGCCTGATTCGGGATCTGGCCACCGGCAATATCGTGCGCCCGGCCTGA

Upstream 100 bases:

>100_bases
CCGCGCGGTGTGCGAAAACGGCCGCTGGTTTGCGCGCGTGAGCTAGGTTTTACATTGAAGATCGGTAAACTGCGCGAAAC
CTGTTTGCGGAGAGTTTTTC

Downstream 100 bases:

>100_bases
GGCCGGGTGCCTTCAATCGCCGGCTTGCCGGCGATGACGCCTTAAGGCAGTAAAACAGTCGAACCTGTCGTGCGCCGCGC
CGACAGCTCGGTCTGCGCTT

Product: SUA5/yciO/yrdC-like

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVADNIRQFDFLFEDFPQDWIDRM
ASTWPGPNTWLVPHQNLLPEWVTGVHDTVALRVSDHPQVRDLCSLVGPLISTSANPQGRPAARTRLRVEQYFRGQVDLVL
GGALGGRKNPSLIRDLATGNIVRPA

Sequences:

>Translated_185_residues
MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVADNIRQFDFLFEDFPQDWIDRM
ASTWPGPNTWLVPHQNLLPEWVTGVHDTVALRVSDHPQVRDLCSLVGPLISTSANPQGRPAARTRLRVEQYFRGQVDLVL
GGALGGRKNPSLIRDLATGNIVRPA
>Mature_185_residues
MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVADNIRQFDFLFEDFPQDWIDRM
ASTWPGPNTWLVPHQNLLPEWVTGVHDTVALRVSDHPQVRDLCSLVGPLISTSANPQGRPAARTRLRVEQYFRGQVDLVL
GGALGGRKNPSLIRDLATGNIVRPA

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=168, Percent_Identity=50, Blast_Score=144, Evalue=5e-36,
Organism=Saccharomyces cerevisiae, GI6321269, Length=172, Percent_Identity=30.2325581395349, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20612; Mature: 20612

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD
CCCCHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
NIRQFDFLFEDFPQDWIDRMASTWPGPNTWLVPHQNLLPEWVTGVHDTVALRVSDHPQVR
CCHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCHHCCHHHHCCCCCEEEEEECCCCCHH
DLCSLVGPLISTSANPQGRPAARTRLRVEQYFRGQVDLVLGGALGGRKNPSLIRDLATGN
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCC
IVRPA
EECCC
>Mature Secondary Structure
MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD
CCCCHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
NIRQFDFLFEDFPQDWIDRMASTWPGPNTWLVPHQNLLPEWVTGVHDTVALRVSDHPQVR
CCHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCHHCCHHHHCCCCCEEEEEECCCCCHH
DLCSLVGPLISTSANPQGRPAARTRLRVEQYFRGQVDLVLGGALGGRKNPSLIRDLATGN
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCC
IVRPA
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA