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The map label for this gene is darR [H]

Identifier: 76819703

GI number: 76819703

Start: 1215651

End: 1216760

Strand: Direct

Name: darR [H]

Synonym: BURPS1710b_A0955

Alternate gene names: 76819703

Gene position: 1215651-1216760 (Clockwise)

Preceding gene: 76817857

Following gene: 76818779

Centisome position: 38.21

GC content: 73.24

Gene sequence:

>1110_bases
ATGAGCGTCGCGCCGGCTCGCGCCGACCGCACCGGCGCGATGGACAAACCGACTGTACGCAATTACCGTATGGCGGATAT
GCCAAAGTCCCCACAGTTCCCGCCAACGCCATCGGCGGCCGCGCCCGCCGCCGCGCGCCGCGCGGTGCACGTGCTCGCGT
TCGACGATGTGCAGTTGCTCGACGTCACCGGGCCGCTGCAAGTGTTCGCGAGCGCGAACGATTTCGCTGCGCGCCGCGGG
CTCGCGATTCCGTACGCGCCGCGCGTCGTCGCCGCCCACGCGCCTTCGGTGATGTCGTCGGCCGGGCTCGCGTTCGCCGC
CGCGCCGCTGCCCGCCGCGCGCGAGCCGTCCGATACGCTGATCGTCGCGGGCGGCTGCGGCGTCCACGGCGCGGCGCGCG
ATCCGCGGCTCGTCGACTGGGTGCGCCGGCGCGCGGCGCACGCGCGGCGCATCGCGTCGGTGTGCTCGGGCGCGTTCGTG
CTCGCGGCGGCGGGGCTGCTGGGCGGACGCCGCGTCGTCACGCACTGGTCGCGCTGCGACGAGCTCGCGCAACGCTATCC
CGACGTGCGCGTCGAGCCCGATCCCATTTTCATCCGCGACGGCAACGTCTGGACGTCGGCAGGCGTCACGGCCGGCATCG
ATCTCGCGCTCGCGCTCGTCGAGGACGACCTCGGCCGCGCGCTGGCGCTCGACGTCGCGCGGTATCTCGTCGTGTTTCTG
AAGCGCCCGGGCGGCCAGGCGCAATTCAGCGCCGCGCTGTCGCTGCAGCACGAGGGCGGCTGCTTCGACGAACTGCACGC
ATGGGCGGCCGCGAATCTCGGCGCGGACTTGTCGGTCGCGGCGCTCGCCGCGCGCGCCGGCATGAGCGAGCGCAGTTTCA
TGCGCCGCTACCGCGAAGCGACCGGCAGGACGCCCGCGCGGGCGATCGAGCAGATGCGCGTCGAAGCCGCGCGCAACCTG
CTCGCCGACGCGCCGCTGCCGATCAAGCGGATCGCCGCGCGCTGCGGATTCGGCAGCGAGGAAACGATGCGCCGCAGTTT
CCTGCGCATGCTCGGCGTGGCACCGCAGGCCTATCGCGAGCGGTTCGCGACGAATCGGCGAGGCGTCTGA

Upstream 100 bases:

>100_bases
GGCCGGTCAGGTCGAGCTGCTGCACCTGCGGAAACAACAGTAATCCCACTTCGATGGTCATGCCGAACCTCCTCCAGTTC
ATCAACGTCACGTCAACATC

Downstream 100 bases:

>100_bases
GCGCCATTTGCGTCGGCGCGACGCGTTGGCGTTGGCGTTGGCGTTGGCGTTGGCGTTGGCGTTGGCGTTGGCGTTGGCAC
TGGCACTGGCATTGGCACTG

Product: DarR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSVAPARADRTGAMDKPTVRNYRMADMPKSPQFPPTPSAAAPAAARRAVHVLAFDDVQLLDVTGPLQVFASANDFAARRG
LAIPYAPRVVAAHAPSVMSSAGLAFAAAPLPAAREPSDTLIVAGGCGVHGAARDPRLVDWVRRRAAHARRIASVCSGAFV
LAAAGLLGGRRVVTHWSRCDELAQRYPDVRVEPDPIFIRDGNVWTSAGVTAGIDLALALVEDDLGRALALDVARYLVVFL
KRPGGQAQFSAALSLQHEGGCFDELHAWAAANLGADLSVAALAARAGMSERSFMRRYREATGRTPARAIEQMRVEAARNL
LADAPLPIKRIAARCGFGSEETMRRSFLRMLGVAPQAYRERFATNRRGV

Sequences:

>Translated_369_residues
MSVAPARADRTGAMDKPTVRNYRMADMPKSPQFPPTPSAAAPAAARRAVHVLAFDDVQLLDVTGPLQVFASANDFAARRG
LAIPYAPRVVAAHAPSVMSSAGLAFAAAPLPAAREPSDTLIVAGGCGVHGAARDPRLVDWVRRRAAHARRIASVCSGAFV
LAAAGLLGGRRVVTHWSRCDELAQRYPDVRVEPDPIFIRDGNVWTSAGVTAGIDLALALVEDDLGRALALDVARYLVVFL
KRPGGQAQFSAALSLQHEGGCFDELHAWAAANLGADLSVAALAARAGMSERSFMRRYREATGRTPARAIEQMRVEAARNL
LADAPLPIKRIAARCGFGSEETMRRSFLRMLGVAPQAYRERFATNRRGV
>Mature_368_residues
SVAPARADRTGAMDKPTVRNYRMADMPKSPQFPPTPSAAAPAAARRAVHVLAFDDVQLLDVTGPLQVFASANDFAARRGL
AIPYAPRVVAAHAPSVMSSAGLAFAAAPLPAAREPSDTLIVAGGCGVHGAARDPRLVDWVRRRAAHARRIASVCSGAFVL
AAAGLLGGRRVVTHWSRCDELAQRYPDVRVEPDPIFIRDGNVWTSAGVTAGIDLALALVEDDLGRALALDVARYLVVFLK
RPGGQAQFSAALSLQHEGGCFDELHAWAAANLGADLSVAALAARAGMSERSFMRRYREATGRTPARAIEQMRVEAARNLL
ADAPLPIKRIAARCGFGSEETMRRSFLRMLGVAPQAYRERFATNRRGV

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=96, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39450; Mature: 39318

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: PS01124 HTH_ARAC_FAMILY_2 ; PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAPARADRTGAMDKPTVRNYRMADMPKSPQFPPTPSAAAPAAARRAVHVLAFDDVQLL
CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHEEEEEEECCEEEE
DVTGPLQVFASANDFAARRGLAIPYAPRVVAAHAPSVMSSAGLAFAAAPLPAAREPSDTL
ECCCHHHHHCCCCHHHHHCCCCCCCCCCHHHHCCCHHHHHCCCCEEECCCCCCCCCCCCE
IVAGGCGVHGAARDPRLVDWVRRRAAHARRIASVCSGAFVLAAAGLLGGRRVVTHWSRCD
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH
ELAQRYPDVRVEPDPIFIRDGNVWTSAGVTAGIDLALALVEDDLGRALALDVARYLVVFL
HHHHHCCCCEECCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPGGQAQFSAALSLQHEGGCFDELHAWAAANLGADLSVAALAARAGMSERSFMRRYREA
HCCCCCCEEHHHEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
TGRTPARAIEQMRVEAARNLLADAPLPIKRIAARCGFGSEETMRRSFLRMLGVAPQAYRE
HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHH
RFATNRRGV
HHHHCCCCC
>Mature Secondary Structure 
SVAPARADRTGAMDKPTVRNYRMADMPKSPQFPPTPSAAAPAAARRAVHVLAFDDVQLL
CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHEEEEEEECCEEEE
DVTGPLQVFASANDFAARRGLAIPYAPRVVAAHAPSVMSSAGLAFAAAPLPAAREPSDTL
ECCCHHHHHCCCCHHHHHCCCCCCCCCCHHHHCCCHHHHHCCCCEEECCCCCCCCCCCCE
IVAGGCGVHGAARDPRLVDWVRRRAAHARRIASVCSGAFVLAAAGLLGGRRVVTHWSRCD
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH
ELAQRYPDVRVEPDPIFIRDGNVWTSAGVTAGIDLALALVEDDLGRALALDVARYLVVFL
HHHHHCCCCEECCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPGGQAQFSAALSLQHEGGCFDELHAWAAANLGADLSVAALAARAGMSERSFMRRYREA
HCCCCCCEEHHHEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
TGRTPARAIEQMRVEAARNLLADAPLPIKRIAARCGFGSEETMRRSFLRMLGVAPQAYRE
HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHH
RFATNRRGV
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]