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The map label for this gene is vsrD [H]

Identifier: 76819050

GI number: 76819050

Start: 155680

End: 156327

Strand: Direct

Name: vsrD [H]

Synonym: BURPS1710b_A0127

Alternate gene names: 76819050

Gene position: 155680-156327 (Clockwise)

Preceding gene: 76818354

Following gene: 76818833

Centisome position: 4.89

GC content: 66.67

Gene sequence:

>648_bases
ATGATCAAGGTCCTGATCGCAGACGATCACGCGCTCGTGCGCGACGGGCTGCGCCACATCCTCGGCGCCGAGACGGGTTT
CGAAGTGGTCGGCGAGGCGTGCGACGGTATTTCTACGATCGAGCTGACGCGCTCGACCGACGCGCAACTGCTCGTGCTCG
ACCTGTCGATGCCGGGCCGCAACGGCATCGATCTCATCAGGCAGATCAAGGAAGAGAAGCCCGCGCTGCGAATTCTCGTG
CTGACGATGCACGCGGAGCAGCAATACGCGTCGCGCGCGTTCCGCGCGGGCGCGTCCGGCTACATGACGAAGGAAAGCGC
CAGCGCGGAGCTCGTCGGCGCGCTCACGAAAATCGCGGCGGGCGGCCTCTACGTGAGCCTCGCGATGGCCGAGCGGCTCG
CGCAGAGCCTGAACGAGCCCGTCGAATCGCTGCCGCACCAGCGGCTGTCGGACCGCGAGTTCGACGTGTTCCGGCGGATC
GCCGCCGGCGAGACGATCACCGAGATCGCGCAGGCGCTCGACGTCAGCGCGAAGACGGTCAGCACCTACAAGGCGCGCAT
TCTCGAGAAGATGCAGATGCCGCACGACGCGGCGCTCGTGCGCTACGCGATCCGGCACAAGCTGTTCGACGACGGCGACG
AGATCTGA

Upstream 100 bases:

>100_bases
TGCTGAGCGGCACGGTCACGATCGACTCGGCGCCCGGGCAGGGTTTCTCGATCAAGGTCGCGCTGCCGCTCGCCGCGATC
CGGCAGACGGACGCGCTCCT

Downstream 100 bases:

>100_bases
GCGACGCGGGCGGCGGGCCGCGCCGCGCGCGGTGCGTTCTCCTACGCGCGGCGCGCGCCACCTCCACGGTTTTACCGCGC
CTGTCGTCTCGCCCCACCCA

Product: LuxR family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MIKVLIADDHALVRDGLRHILGAETGFEVVGEACDGISTIELTRSTDAQLLVLDLSMPGRNGIDLIRQIKEEKPALRILV
LTMHAEQQYASRAFRAGASGYMTKESASAELVGALTKIAAGGLYVSLAMAERLAQSLNEPVESLPHQRLSDREFDVFRRI
AAGETITEIAQALDVSAKTVSTYKARILEKMQMPHDAALVRYAIRHKLFDDGDEI

Sequences:

>Translated_215_residues
MIKVLIADDHALVRDGLRHILGAETGFEVVGEACDGISTIELTRSTDAQLLVLDLSMPGRNGIDLIRQIKEEKPALRILV
LTMHAEQQYASRAFRAGASGYMTKESASAELVGALTKIAAGGLYVSLAMAERLAQSLNEPVESLPHQRLSDREFDVFRRI
AAGETITEIAQALDVSAKTVSTYKARILEKMQMPHDAALVRYAIRHKLFDDGDEI
>Mature_215_residues
MIKVLIADDHALVRDGLRHILGAETGFEVVGEACDGISTIELTRSTDAQLLVLDLSMPGRNGIDLIRQIKEEKPALRILV
LTMHAEQQYASRAFRAGASGYMTKESASAELVGALTKIAAGGLYVSLAMAERLAQSLNEPVESLPHQRLSDREFDVFRRI
AAGETITEIAQALDVSAKTVSTYKARILEKMQMPHDAALVRYAIRHKLFDDGDEI

Specific function: Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. UvrY activates the transcription of the untranslated csrB RNA and of barA, in an autoregulatory loop. Mediates the

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=211, Percent_Identity=36.0189573459716, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790102, Length=210, Percent_Identity=30.952380952381, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1788521, Length=196, Percent_Identity=33.6734693877551, Blast_Score=103, Evalue=6e-24,
Organism=Escherichia coli, GI1788546, Length=204, Percent_Identity=34.8039215686275, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788712, Length=207, Percent_Identity=26.5700483091787, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1786747, Length=208, Percent_Identity=27.8846153846154, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787473, Length=182, Percent_Identity=34.0659340659341, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788191, Length=119, Percent_Identity=32.7731092436975, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87082052, Length=118, Percent_Identity=31.3559322033898, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23573; Mature: 23573

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVLIADDHALVRDGLRHILGAETGFEVVGEACDGISTIELTRSTDAQLLVLDLSMPGR
CEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCC
NGIDLIRQIKEEKPALRILVLTMHAEQQYASRAFRAGASGYMTKESASAELVGALTKIAA
CCHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
GGLYVSLAMAERLAQSLNEPVESLPHQRLSDREFDVFRRIAAGETITEIAQALDVSAKTV
CHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHH
STYKARILEKMQMPHDAALVRYAIRHKLFDDGDEI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIKVLIADDHALVRDGLRHILGAETGFEVVGEACDGISTIELTRSTDAQLLVLDLSMPGR
CEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCC
NGIDLIRQIKEEKPALRILVLTMHAEQQYASRAFRAGASGYMTKESASAELVGALTKIAA
CCHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
GGLYVSLAMAERLAQSLNEPVESLPHQRLSDREFDVFRRIAAGETITEIAQALDVSAKTV
CHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHH
STYKARILEKMQMPHDAALVRYAIRHKLFDDGDEI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]