| Definition | Burkholderia pseudomallei 1710b chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_007435 |
| Length | 3,181,762 |
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The map label for this gene is htrE [H]
Identifier: 76818889
GI number: 76818889
Start: 1950099
End: 1952840
Strand: Direct
Name: htrE [H]
Synonym: BURPS1710b_A1600
Alternate gene names: 76818889
Gene position: 1950099-1952840 (Clockwise)
Preceding gene: 76818373
Following gene: 76818341
Centisome position: 61.29
GC content: 64.3
Gene sequence:
>2742_bases ATGATCGCCGCTGGAGCAGTTGCATGCGGCGTTGGATCGTTGTGCATGCCGGTCGTCGCGGCGGAATTCGACGGCACGCG AACGGGCGAACAATCGCGCCCGGATGCAATGGGCGAGGCGCCGTCTGGCGCAGAGCCGGGGACGCGTGGCCGGCAAGCCT TGCTGGTCGCGTCCCATGCATCCCCGTCAGCGCCGACGACGGTCTCGTTCAATTCGCGCCTGCTCATGGGCGGCGGAATC GATCTGTCGCGCTTCGAGCGAGGCAATCCCGTAGTGGCCGGCATTTACCCGGTCGACGTGACAGTCAACGGCGAACGACG CGGGCGGATGGACGTCGAGTTTCGCGACGTTCGCGGCGGCGACAGTGCGGCGCCATGCTTTACGCGCGCGATGCTGGATC GGCTCGGCGTGGAAGGCGACATCGTCGCCAAGCGCCTCGATGCCGCGCGCGACGCGACGGGCGCGGCATCGGGCCAGACG CCGACGCTTTCCGCGAGCGCTTGCATCGGCTTGCGCGATGCGCTGCCTGATGCGACGTATACGCTCGACAGCGCCGACCT CACGCTCGATCTGACGATCCCGCAGGTGGACATGCGCAAGACCGCGCGCGGCTACGTGGACCCGTCCCGATGGGACAACG GCGTCAACGCCGGACTGCTGCAGTACAACCTCAGCGGCTACGCGAGCGAAAACAAGTTCTTCGGGAACCATGCGAGCAGC CTCTTTCTCGGTTTGCAAGCGGGCGCGAATATCGGGGCTTGGCGTGTTCGTCAACGTTCGAACCTGATGTGGGCAAACCG CAGCGCCGGCATGAGCTGGCGCAGCCTCGAAACCTACGTTCAACGGGACATCACGGCGTTGCGCAGCCAGATCACGCTCG GCGACAGCTACACGACCGGCGAGATCTTCGAGTCGTTCGGTGTGCGTGGCATGCAGCTGGCAAGCGATGACCGGATGTTG CCGGTTTCGCTGCAGTCCTATGCGCCGACGGTTCGCGGCGTCGCGGATACGAACGCGCGCGTGGCCGTGCGCCAGCGCGG CAACGTGATTTACGAGGCCAGCGTTCCGCCCGGACCGTTCGAATTCGACGACTTGCCGCCGACCGGCTACGGCGGCGATC TCGATGTGACGATCACCGAATCGGACGGCAGAACGAAACATTTCACGGTGCCTTTCGCATCGGTGCGCCAACTCCTGCGG CCCGGCATGCAGCGCTTCAACTTCACCGTCGGCCAGTATCGAGATGCGCTGTCGAACGGTAAGCCATGGGTCGCGCAACT GACCTATCAGCGCGGCATGACGAATTTGCTGACCGGCTATGCAGGTCTGCTGTCGTCGACGGGTTACGCGTCCGGCTTGA TCGGCGTCGCGCTCAACACGCCGATCGGCGCTTTCGCTTTCGATGTCACGTCCGCGCGCACCCATTTGCCCGGACAAGGC GCGCGTAACGGATTCAGCTCGCATCTGTCGTACAGCAAGATGGTGCCGTCCACCGGAACCCATTTCTCCATGGCGGCGTA CCGATATTCGACGGCGAATTACTACAGTCTCGCCGACGCCGTTACCGCGCGCTACGGCTACAACGCGGAAGAGCGCGCAT GGCGAAACGACTATCGGGCGCGCACGCGATTGCAGCTGAACGTCAATCAGCGGATCGGAGACCGGAGCTCCGCCTATGTT TCGAGCAGTCTGCTGAGTTATTGGGACGGGCGTGGACGGGACATTCAGTTTCAGGCGGGATTTTCAAGCGTCTTCAAGCG CGTCTCGTATACGGTCTACGCCCAGCGCAGCCGCTCGAGCGACGATCGCACCGTTACGCAGGTTGGCGTGAATTTGTCGA TTCCGCTTGGCAGCGGCGCTTATACGAAGAGAAATGCGTTCAGTTCGCTGACGACTTCGCTGTCGCGCGCGTCCAACGGC GACAGTTCGATTCAGGCGAATCTGTCGGGCAGCACGGCGCACGTGGTGCCGATCGACTACGGCGTCAACGTGTCGCGCTC GGTTACCGGCGACAGCAATTTCGCATCGCTTGGGGTCTATGGCACTTATCGCTCGCCGTTCGGCACGTACAGCGGCAACG CATCGGTCGACAATCGGGCGCGTCAGGCGTCGTTCGGCGCGAACGGGGCGGTGGTCCTGCATCGCGGCGGCGTGACGTTG AGCCCGCCGCTCGGATCTGCGGCGGCGCTCGTCGAGGCGAAAGGCGCGAGAGGCGGCAAGCTGATCAACGGGCAGGGCGC GACGATCGATCGCTTCGGCTACGCGGTGATTCCTTCGTTGATGCCGTATCGAGCCAACACCGTCGCCATCGATCCGTCCG AGCTGCCGGACGACGTCGAACTCGCGAATACGAGCGAGGAGGTCGTGCCTCGCAACAATTCGATCGTCTTCGTGAAGATG GAAACCAAGCGCGGAAGGCCGGTCTTCGCCGCGACCGAAACCGAAGACGGCAAACCCCTGCCGATGGGCAGCGAGCTGTT CGACGTCGAGGGCAAGTCGCTCGGCGGCGTGGGTCAAGGCGGCATGGCGTTTCTGCGCGGTCTCCAGGGCGCCGGCAATG TGGTCGCGAAGTGGGGGGCGGGTGCGTCCGAGCAATGCACGATGCCCTACCTGGTGCCGGCGGATCAGGCGCAAGCGAAG CAATCACGGGCGATCGTTCGCATCCGCTTGCGTTGCGAGCCGCGATTGAGCGCCGACGCGAGCCAGACGCCGGACGGCGA TGGCGGAACACGGAATGATTGA
Upstream 100 bases:
>100_bases AGGTTCGACAAGGGGGGAACGAGTGGCCCTAGCATCAAGTGCAGAGACGTCGGAGCGAGATCGCGGCGGTGAGCCGCGAG CGTTGCGCCGCCGCCAGATG
Downstream 100 bases:
>100_bases GATGAATGGGCTGAAATTCAGGAGAGGCGCGGCGCGCCGATGGCCGTCGATCGCCGCTGCCGCAATGTTCGCGGCTTCGG CGGCCTGCGGCGCGCCGCCG
Product: outer membrane usher protein
Products: NA
Alternate protein names: Heat shock protein E [H]
Number of amino acids: Translated: 913; Mature: 913
Protein sequence:
>913_residues MIAAGAVACGVGSLCMPVVAAEFDGTRTGEQSRPDAMGEAPSGAEPGTRGRQALLVASHASPSAPTTVSFNSRLLMGGGI DLSRFERGNPVVAGIYPVDVTVNGERRGRMDVEFRDVRGGDSAAPCFTRAMLDRLGVEGDIVAKRLDAARDATGAASGQT PTLSASACIGLRDALPDATYTLDSADLTLDLTIPQVDMRKTARGYVDPSRWDNGVNAGLLQYNLSGYASENKFFGNHASS LFLGLQAGANIGAWRVRQRSNLMWANRSAGMSWRSLETYVQRDITALRSQITLGDSYTTGEIFESFGVRGMQLASDDRML PVSLQSYAPTVRGVADTNARVAVRQRGNVIYEASVPPGPFEFDDLPPTGYGGDLDVTITESDGRTKHFTVPFASVRQLLR PGMQRFNFTVGQYRDALSNGKPWVAQLTYQRGMTNLLTGYAGLLSSTGYASGLIGVALNTPIGAFAFDVTSARTHLPGQG ARNGFSSHLSYSKMVPSTGTHFSMAAYRYSTANYYSLADAVTARYGYNAEERAWRNDYRARTRLQLNVNQRIGDRSSAYV SSSLLSYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSSDDRTVTQVGVNLSIPLGSGAYTKRNAFSSLTTSLSRASNG DSSIQANLSGSTAHVVPIDYGVNVSRSVTGDSNFASLGVYGTYRSPFGTYSGNASVDNRARQASFGANGAVVLHRGGVTL SPPLGSAAALVEAKGARGGKLINGQGATIDRFGYAVIPSLMPYRANTVAIDPSELPDDVELANTSEEVVPRNNSIVFVKM ETKRGRPVFAATETEDGKPLPMGSELFDVEGKSLGGVGQGGMAFLRGLQGAGNVVAKWGAGASEQCTMPYLVPADQAQAK QSRAIVRIRLRCEPRLSADASQTPDGDGGTRND
Sequences:
>Translated_913_residues MIAAGAVACGVGSLCMPVVAAEFDGTRTGEQSRPDAMGEAPSGAEPGTRGRQALLVASHASPSAPTTVSFNSRLLMGGGI DLSRFERGNPVVAGIYPVDVTVNGERRGRMDVEFRDVRGGDSAAPCFTRAMLDRLGVEGDIVAKRLDAARDATGAASGQT PTLSASACIGLRDALPDATYTLDSADLTLDLTIPQVDMRKTARGYVDPSRWDNGVNAGLLQYNLSGYASENKFFGNHASS LFLGLQAGANIGAWRVRQRSNLMWANRSAGMSWRSLETYVQRDITALRSQITLGDSYTTGEIFESFGVRGMQLASDDRML PVSLQSYAPTVRGVADTNARVAVRQRGNVIYEASVPPGPFEFDDLPPTGYGGDLDVTITESDGRTKHFTVPFASVRQLLR PGMQRFNFTVGQYRDALSNGKPWVAQLTYQRGMTNLLTGYAGLLSSTGYASGLIGVALNTPIGAFAFDVTSARTHLPGQG ARNGFSSHLSYSKMVPSTGTHFSMAAYRYSTANYYSLADAVTARYGYNAEERAWRNDYRARTRLQLNVNQRIGDRSSAYV SSSLLSYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSSDDRTVTQVGVNLSIPLGSGAYTKRNAFSSLTTSLSRASNG DSSIQANLSGSTAHVVPIDYGVNVSRSVTGDSNFASLGVYGTYRSPFGTYSGNASVDNRARQASFGANGAVVLHRGGVTL SPPLGSAAALVEAKGARGGKLINGQGATIDRFGYAVIPSLMPYRANTVAIDPSELPDDVELANTSEEVVPRNNSIVFVKM ETKRGRPVFAATETEDGKPLPMGSELFDVEGKSLGGVGQGGMAFLRGLQGAGNVVAKWGAGASEQCTMPYLVPADQAQAK QSRAIVRIRLRCEPRLSADASQTPDGDGGTRND >Mature_913_residues MIAAGAVACGVGSLCMPVVAAEFDGTRTGEQSRPDAMGEAPSGAEPGTRGRQALLVASHASPSAPTTVSFNSRLLMGGGI DLSRFERGNPVVAGIYPVDVTVNGERRGRMDVEFRDVRGGDSAAPCFTRAMLDRLGVEGDIVAKRLDAARDATGAASGQT PTLSASACIGLRDALPDATYTLDSADLTLDLTIPQVDMRKTARGYVDPSRWDNGVNAGLLQYNLSGYASENKFFGNHASS LFLGLQAGANIGAWRVRQRSNLMWANRSAGMSWRSLETYVQRDITALRSQITLGDSYTTGEIFESFGVRGMQLASDDRML PVSLQSYAPTVRGVADTNARVAVRQRGNVIYEASVPPGPFEFDDLPPTGYGGDLDVTITESDGRTKHFTVPFASVRQLLR PGMQRFNFTVGQYRDALSNGKPWVAQLTYQRGMTNLLTGYAGLLSSTGYASGLIGVALNTPIGAFAFDVTSARTHLPGQG ARNGFSSHLSYSKMVPSTGTHFSMAAYRYSTANYYSLADAVTARYGYNAEERAWRNDYRARTRLQLNVNQRIGDRSSAYV SSSLLSYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSSDDRTVTQVGVNLSIPLGSGAYTKRNAFSSLTTSLSRASNG DSSIQANLSGSTAHVVPIDYGVNVSRSVTGDSNFASLGVYGTYRSPFGTYSGNASVDNRARQASFGANGAVVLHRGGVTL SPPLGSAAALVEAKGARGGKLINGQGATIDRFGYAVIPSLMPYRANTVAIDPSELPDDVELANTSEEVVPRNNSIVFVKM ETKRGRPVFAATETEDGKPLPMGSELFDVEGKSLGGVGQGGMAFLRGLQGAGNVVAKWGAGASEQCTMPYLVPADQAQAK QSRAIVRIRLRCEPRLSADASQTPDGDGGTRND
Specific function: Probable porin-like protein necessary for the assembly of a pilin-type protein [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786332, Length=848, Percent_Identity=37.2641509433962, Blast_Score=541, Evalue=1e-155, Organism=Escherichia coli, GI1790772, Length=872, Percent_Identity=34.8623853211009, Blast_Score=461, Evalue=1e-130, Organism=Escherichia coli, GI1789533, Length=798, Percent_Identity=34.4611528822055, Blast_Score=443, Evalue=1e-125, Organism=Escherichia coli, GI1786744, Length=855, Percent_Identity=33.6842105263158, Blast_Score=431, Evalue=1e-122, Organism=Escherichia coli, GI1787172, Length=844, Percent_Identity=31.9905213270142, Blast_Score=412, Evalue=1e-116, Organism=Escherichia coli, GI1788427, Length=812, Percent_Identity=29.5566502463054, Blast_Score=365, Evalue=1e-102, Organism=Escherichia coli, GI87081778, Length=841, Percent_Identity=29.1319857312723, Blast_Score=265, Evalue=1e-71, Organism=Escherichia coli, GI1789610, Length=805, Percent_Identity=23.9751552795031, Blast_Score=141, Evalue=2e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 97256; Mature: 97256
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAAGAVACGVGSLCMPVVAAEFDGTRTGEQSRPDAMGEAPSGAEPGTRGRQALLVASHA CCCCCCHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC SPSAPTTVSFNSRLLMGGGIDLSRFERGNPVVAGIYPVDVTVNGERRGRMDVEFRDVRGG CCCCCEEEECCCEEEEECCCCHHHHCCCCCEEEEEEEEEEEECCCCCCCCCEEEEECCCC DSAAPCFTRAMLDRLGVEGDIVAKRLDAARDATGAASGQTPTLSASACIGLRDALPDATY CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEHHHCCCCCEE TLDSADLTLDLTIPQVDMRKTARGYVDPSRWDNGVNAGLLQYNLSGYASENKFFGNHASS EECCCCEEEEEECCCHHHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCE LFLGLQAGANIGAWRVRQRSNLMWANRSAGMSWRSLETYVQRDITALRSQITLGDSYTTG EEEEEECCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHH EIFESFGVRGMQLASDDRMLPVSLQSYAPTVRGVADTNARVAVRQRGNVIYEASVPPGPF HHHHHHCCCCEEECCCCCEEEEEHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCC EFDDLPPTGYGGDLDVTITESDGRTKHFTVPFASVRQLLRPGMQRFNFTVGQYRDALSNG CCCCCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHCCC KPWVAQLTYQRGMTNLLTGYAGLLSSTGYASGLIGVALNTPIGAFAFDVTSARTHLPGQG CCEEEEEEHHHCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC ARNGFSSHLSYSKMVPSTGTHFSMAAYRYSTANYYSLADAVTARYGYNAEERAWRNDYRA CCCCHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCE RTRLQLNVNQRIGDRSSAYVSSSLLSYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSS EEEEEEEEHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHEEEEEECCCCC DDRTVTQVGVNLSIPLGSGAYTKRNAFSSLTTSLSRASNGDSSIQANLSGSTAHVVPIDY CCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEC GVNVSRSVTGDSNFASLGVYGTYRSPFGTYSGNASVDNRARQASFGANGAVVLHRGGVTL CCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCEEE SPPLGSAAALVEAKGARGGKLINGQGATIDRFGYAVIPSLMPYRANTVAIDPSELPDDVE CCCCCCCEEEEEECCCCCCEEECCCCCCHHHCCHHHHHHCCCCCCCEEEECHHHCCCCCE LANTSEEVVPRNNSIVFVKMETKRGRPVFAATETEDGKPLPMGSELFDVEGKSLGGVGQG ECCCCHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCC GMAFLRGLQGAGNVVAKWGAGASEQCTMPYLVPADQAQAKQSRAIVRIRLRCEPRLSADA HHHHHHHCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEECCCCCCCC SQTPDGDGGTRND CCCCCCCCCCCCC >Mature Secondary Structure MIAAGAVACGVGSLCMPVVAAEFDGTRTGEQSRPDAMGEAPSGAEPGTRGRQALLVASHA CCCCCCHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC SPSAPTTVSFNSRLLMGGGIDLSRFERGNPVVAGIYPVDVTVNGERRGRMDVEFRDVRGG CCCCCEEEECCCEEEEECCCCHHHHCCCCCEEEEEEEEEEEECCCCCCCCCEEEEECCCC DSAAPCFTRAMLDRLGVEGDIVAKRLDAARDATGAASGQTPTLSASACIGLRDALPDATY CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEHHHCCCCCEE TLDSADLTLDLTIPQVDMRKTARGYVDPSRWDNGVNAGLLQYNLSGYASENKFFGNHASS EECCCCEEEEEECCCHHHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCE LFLGLQAGANIGAWRVRQRSNLMWANRSAGMSWRSLETYVQRDITALRSQITLGDSYTTG EEEEEECCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHH EIFESFGVRGMQLASDDRMLPVSLQSYAPTVRGVADTNARVAVRQRGNVIYEASVPPGPF HHHHHHCCCCEEECCCCCEEEEEHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCC EFDDLPPTGYGGDLDVTITESDGRTKHFTVPFASVRQLLRPGMQRFNFTVGQYRDALSNG CCCCCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHCCC KPWVAQLTYQRGMTNLLTGYAGLLSSTGYASGLIGVALNTPIGAFAFDVTSARTHLPGQG CCEEEEEEHHHCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC ARNGFSSHLSYSKMVPSTGTHFSMAAYRYSTANYYSLADAVTARYGYNAEERAWRNDYRA CCCCHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCE RTRLQLNVNQRIGDRSSAYVSSSLLSYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSS EEEEEEEEHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHEEEEEECCCCC DDRTVTQVGVNLSIPLGSGAYTKRNAFSSLTTSLSRASNGDSSIQANLSGSTAHVVPIDY CCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEC GVNVSRSVTGDSNFASLGVYGTYRSPFGTYSGNASVDNRARQASFGANGAVVLHRGGVTL CCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCEEE SPPLGSAAALVEAKGARGGKLINGQGATIDRFGYAVIPSLMPYRANTVAIDPSELPDDVE CCCCCCCEEEEEECCCCCCEEECCCCCCHHHCCHHHHHHCCCCCCCEEEECHHHCCCCCE LANTSEEVVPRNNSIVFVKMETKRGRPVFAATETEDGKPLPMGSELFDVEGKSLGGVGQG ECCCCHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCC GMAFLRGLQGAGNVVAKWGAGASEQCTMPYLVPADQAQAKQSRAIVRIRLRCEPRLSADA HHHHHHHCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEECCCCCCCC SQTPDGDGGTRND CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8102362; 8202364; 9278503 [H]