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The map label for this gene is staB [H]

Identifier: 76818373

GI number: 76818373

Start: 1949261

End: 1949983

Strand: Direct

Name: staB [H]

Synonym: BURPS1710b_A1599

Alternate gene names: 76818373

Gene position: 1949261-1949983 (Clockwise)

Preceding gene: 76819245

Following gene: 76818889

Centisome position: 61.26

GC content: 60.72

Gene sequence:

>723_bases
ATGTGCGTCGCCGTGGCGGCGGCGTGTTGTCTGGCTTCGACCTTGTCCCAGGCGGCGATCGTCATCACCGGAACCCGCGT
CGTCTATCCGGAAAGCAGTCGCGAGGTCAACGTTCGGCTCAACAACGTCGAGCAGTCGCCGGTATTGGTGCAGGCGTGGA
TCGATGACGGAAATGCGGGCGCGAGCCCGGACGAGATCAAGGTGCCGTTCGTTCTCATGCCGCCCGTGTTTCGCGTCGAA
CCGAAGAAGGGGCAAACGCTGCGCGTCATGTACACGGGCGACGATCTGCCGAAGGACCGCGAATCCGTGTACTGGCTGAA
CGTCCTGGAAATTCCTCCAAAGCCGACCGTCGAAGCCGAGCAGAACCTCTTGCAGCTCGCGTTCCGCACGCGCATCAAAC
TGTTTTTCCGCCCGTCTGCGTTGGAGGACGGAAACGCGGCGCAGGCGCGCGATCAGCTCAAATGGAAGATCGTGCGCAAC
GAAAAGGGCGTGAGCGTGCTGCGTGCGGAGAATCGTTCTCCTTATTACATCTCGATAAGCCAGGCGACCGCGAAAAGCGG
CGACAAGAGCGTGCAGTTCGATCCGGGCATGGTCCCTCCGTTCGGCAGCAAGGAATTCGTGAGCAAGCATGACATCTCGA
CGCTGTCCACGCATGCCGAGATTGCCTACAAGCTGCTCAATGACTATGGGGCGGAAGTGGCGGGCTCGGCAACCGCGGAA
TAA

Upstream 100 bases:

>100_bases
TTCACGCTTGCCTACGAATAAGTAGAAAACGGAGATCCGGGGAACCAGGCGTTCCCTGGAACCGCAATCAATCACGGAGG
TATGCGTGCGGTTATGGAAA

Downstream 100 bases:

>100_bases
GCGGCCGGACGAATAAGGTTCGACAAGGGGGGAACGAGTGGCCCTAGCATCAAGTGCAGAGACGTCGGAGCGAGATCGCG
GCGGTGAGCCGCGAGCGTTG

Product: chaperone protein EcpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAGASPDEIKVPFVLMPPVFRVE
PKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAEQNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRN
EKGVSVLRAENRSPYYISISQATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE

Sequences:

>Translated_240_residues
MCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAGASPDEIKVPFVLMPPVFRVE
PKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAEQNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRN
EKGVSVLRAENRSPYYISISQATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE
>Mature_240_residues
MCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAGASPDEIKVPFVLMPPVFRVE
PKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAEQNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRN
EKGVSVLRAENRSPYYISISQATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=240, Percent_Identity=45, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1788428, Length=189, Percent_Identity=36.5079365079365, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790771, Length=235, Percent_Identity=32.7659574468085, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1788677, Length=213, Percent_Identity=34.7417840375587, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1789532, Length=179, Percent_Identity=30.7262569832402, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787171, Length=231, Percent_Identity=29.4372294372294, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1786743, Length=170, Percent_Identity=33.5294117647059, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786936, Length=234, Percent_Identity=28.2051282051282, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082203, Length=235, Percent_Identity=30.2127659574468, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87081806, Length=218, Percent_Identity=29.8165137614679, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26354; Mature: 26354

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAG
CHHHHHHHHHHHHHHCCEEEEEECCEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCC
ASPDEIKVPFVLMPPVFRVEPKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAE
CCCCCEEEEEEECCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHH
QNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRNEKGVSVLRAENRSPYYISIS
HHHHHHHHHHHEEEEECCCCCCCCCHHHHHHCEEEEEEECCCCEEEEEECCCCCEEEEEE
QATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE
CCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAG
CHHHHHHHHHHHHHHCCEEEEEECCEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCC
ASPDEIKVPFVLMPPVFRVEPKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAE
CCCCCEEEEEEECCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHH
QNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRNEKGVSVLRAENRSPYYISIS
HHHHHHHHHHHEEEEECCCCCCCCCHHHHHHCEEEEEEECCCCEEEEEECCCCCEEEEEE
QATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE
CCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]