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The map label for this gene is ydfH [H]

Identifier: 76818707

GI number: 76818707

Start: 695821

End: 696588

Strand: Direct

Name: ydfH [H]

Synonym: BURPS1710b_A0509

Alternate gene names: 76818707

Gene position: 695821-696588 (Clockwise)

Preceding gene: 76819672

Following gene: 76818053

Centisome position: 21.87

GC content: 69.4

Gene sequence:

>768_bases
ATGAATTGCACCCTGCCTCGCCCCCGAATGAAGAGCCCATTGATGAGCGACAAGGAACCCGCGGAAGACGTCGTCGTCGC
GGCGCTGAACGGCTTCGTGCTCGACGCCGAGCGCTCGTACACGCAACAGGTGCACGCGCTGCTGCGCAACGCGATCGTGC
GCGGCGCGCTGCCGCCGCGCACCGCGCTGTCGGAGGCGGTCATCTCGGCCACGATCGACGTGAGCCGCACGCCCGTGCGC
GAAGCGCTCGCGCAGCTCGCCGACGAGCGGCTCGTGCAGATCTACCGCAAGGTCGGCACGCTCGTCGCGCCGATCTCGGT
GTCGATGCTAGAGGAAGGCCGCTTCGCGCGCGGCACGCTCGAATGCGCGAACCACGTCGATCTCGCGCAGAAGATCACGC
CGGCGCAGCTCGCGGAGCTCGCCCGCCTCGTCGACGCGCAACGCGACGCGGTGGCCGCGCACGACGTCGACACGTTCTTC
ACGCTCGACGAGACGATGCACGGCCGGATGTTCGAATTCGCCGGCCGCCCGCACGTGTGGGCCATGCTGCAACCGATGAA
ACGGCAGTTCGACCGCGTGCGCTGGCTGCTGCTCGATCGCGTCGAAGACCACGCGCGCCGCGCGCTGCACGAGCACGAGC
AGATCCTCGCGCACATCGCGGCGCGCAACATGGCGCTGCTCGGCGCATCGGTCGCGGTGCACGTCGACCGCGTGAACGCC
CACTTGCCCGAGGTGCGCGAGCGCGCGCCCCACTACTTTGTCGACTGA

Upstream 100 bases:

>100_bases
TTGACGTATCGACAGCAGATTATTCCGAGCGCTCTTGCATTTTTATCGGTGTAAACGCTACATCCGCTTTTATAGCCATC
GCATGTACCATGGTAGATAG

Downstream 100 bases:

>100_bases
CCCCCTCACCGGAGAAACCGCGTGAAAATCGAACGGCTGAACATCATCGTCACCTGCCCCGGCCGGAATTTCGTGACGGT
CAAGATCGTCACCGACGAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MNCTLPRPRMKSPLMSDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPRTALSEAVISATIDVSRTPVR
EALAQLADERLVQIYRKVGTLVAPISVSMLEEGRFARGTLECANHVDLAQKITPAQLAELARLVDAQRDAVAAHDVDTFF
TLDETMHGRMFEFAGRPHVWAMLQPMKRQFDRVRWLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNA
HLPEVRERAPHYFVD

Sequences:

>Translated_255_residues
MNCTLPRPRMKSPLMSDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPRTALSEAVISATIDVSRTPVR
EALAQLADERLVQIYRKVGTLVAPISVSMLEEGRFARGTLECANHVDLAQKITPAQLAELARLVDAQRDAVAAHDVDTFF
TLDETMHGRMFEFAGRPHVWAMLQPMKRQFDRVRWLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNA
HLPEVRERAPHYFVD
>Mature_255_residues
MNCTLPRPRMKSPLMSDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPRTALSEAVISATIDVSRTPVR
EALAQLADERLVQIYRKVGTLVAPISVSMLEEGRFARGTLECANHVDLAQKITPAQLAELARLVDAQRDAVAAHDVDTFF
TLDETMHGRMFEFAGRPHVWAMLQPMKRQFDRVRWLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNA
HLPEVRERAPHYFVD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=220, Percent_Identity=30, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28619; Mature: 28619

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCTLPRPRMKSPLMSDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHHCCCCCH
TALSEAVISATIDVSRTPVREALAQLADERLVQIYRKVGTLVAPISVSMLEEGRFARGTL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ECANHVDLAQKITPAQLAELARLVDAQRDAVAAHDVDTFFTLDETMHGRMFEFAGRPHVW
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHCCHHHHHCCCCHHH
AMLQPMKRQFDRVRWLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHC
HLPEVRERAPHYFVD
CCHHHHHHCCCCCCC
>Mature Secondary Structure
MNCTLPRPRMKSPLMSDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHHCCCCCH
TALSEAVISATIDVSRTPVREALAQLADERLVQIYRKVGTLVAPISVSMLEEGRFARGTL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ECANHVDLAQKITPAQLAELARLVDAQRDAVAAHDVDTFFTLDETMHGRMFEFAGRPHVW
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHCCHHHHHCCCCHHH
AMLQPMKRQFDRVRWLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHC
HLPEVRERAPHYFVD
CCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]