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The map label for this gene is yafC [H]

Identifier: 76818600

GI number: 76818600

Start: 2421201

End: 2422112

Strand: Direct

Name: yafC [H]

Synonym: BURPS1710b_A1984

Alternate gene names: 76818600

Gene position: 2421201-2422112 (Clockwise)

Preceding gene: 76817405

Following gene: 76817434

Centisome position: 76.1

GC content: 70.39

Gene sequence:

>912_bases
ATGGACAAATTACTGGCACTGCAGACCTTCGCCGTCGTCGCCGATACGGGCGGCTTCTCGAAGGCCGCGCGGCAACTCGG
CACCGCGACGTCCTCGGTGACGCGGCTGATGGATGCGCTGGAAGCGTCGCTCGGCGTCACGCTGCTCACGCGCACGACGC
GCCACGTGACGCTCACCGACGCCGGCGCGACCTATCTCGAGCAGGTCGGCGCGCTGCTGTCGCAACTCGTCGAGGCCGAC
GAGAGCGTCGCCGACGCCGGCGGCGAGCCCGTCGGCACGCTGCGCGTGTCGGTGCCCGTCACCTATGCGCGCATCGTGCT
GGGCCCTCATCTGTCCGCGTTTCTCGACGCGTATCCGCGCGTGTCGCTCGATCTCGCCGTGTCCGACGCGTATCTGGATC
TCGCGACCGATCGCATCGACGTCGCGGTGCGGATCGGTGAGCCGTCGCGGGACCCCGGCCTCGTCGTGCGCGGGCTCGCG
CCGAATCGGCGCATCGTCGTCGCGAGCCGCGACTATCTCGACCGGATGGGCACGCCCGCCGCGCCGGGCGATCTCGCGGC
GCACCGGTGCCTGCGGTTTCCGTATCGGCAGGGGCGGCAAAGCTGGACGTTCAGCCGGGACGGCCATTCGGAGAAGATCG
ACGTCGGGGGCCGGCTGACGGCGAACAGTCTCGACATCCTGCGCGAAGGCGTATTGAGCGGGCAGGGCGTCGCGCTCGTG
CCGATGTGGCTCGTGCACGACGACATCGTCGCGGGCCGCCTGCTGCCGCTGTTCGAATCATGGTGCGTGACGCCGCCGGG
CGGCGATGCGCAGGTCTATGCGGCGTACCTGCCGAACCGGCGCCACTCGCGCAAGGTGCAGACGTTCATCGCGTTTCTCG
CGCAGCGCATGCCGGGCGCGCCCGGCCGTTGA

Upstream 100 bases:

>100_bases
CTCCTTGCGATGGGAATGGGCACAGCGTAGAGGGCGCGGATAAGATGCGGAATGCCGGCCGGCGGCAATCCGGCGTTGCG
CGATTCGCAATGGAAACGAC

Downstream 100 bases:

>100_bases
GCGGGGCGCCGGCCGGGGCCGCGGGACGGCCGGCGAGCGGGCGGACGGGTGAGCCGCCGCGCGGCCGCTTGGCGAATTGC
CGGGCGCGTGGCCGAGGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDKLLALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYLEQVGALLSQLVEAD
ESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLAVSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLA
PNRRIVVASRDYLDRMGTPAAPGDLAAHRCLRFPYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALV
PMWLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFLAQRMPGAPGR

Sequences:

>Translated_303_residues
MDKLLALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYLEQVGALLSQLVEAD
ESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLAVSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLA
PNRRIVVASRDYLDRMGTPAAPGDLAAHRCLRFPYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALV
PMWLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFLAQRMPGAPGR
>Mature_303_residues
MDKLLALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYLEQVGALLSQLVEAD
ESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLAVSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLA
PNRRIVVASRDYLDRMGTPAAPGDLAAHRCLRFPYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALV
PMWLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFLAQRMPGAPGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=34.006734006734, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=34, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=31.740614334471, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=32.4137931034483, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=28.7719298245614, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787128, Length=275, Percent_Identity=29.0909090909091, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789440, Length=299, Percent_Identity=27.4247491638796, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789173, Length=263, Percent_Identity=31.1787072243346, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1786448, Length=259, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=151, Percent_Identity=29.8013245033113, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790011, Length=271, Percent_Identity=23.9852398523985, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=24.7524752475248, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32555; Mature: 32555

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLLALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTD
CCCHHHHHHEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEECCEEEEEEC
AGATYLEQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEHHHHCCCHHHHHHCCCC
VSLDLAVSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPA
CEEEEEEEHHHHHHCCCEEEEEEEECCCCCCCCEEEECCCCCCEEEEEEHHHHHHCCCCC
APGDLAAHRCLRFPYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALV
CCHHHHHHHHHHCHHHCCCCCCCCCCCCCCCEECCCCEEECHHHHHHHHHHCCCCCEEEE
PMWLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFLAQRMPGA
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
PGR
CCC
>Mature Secondary Structure
MDKLLALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTD
CCCHHHHHHEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEECCEEEEEEC
AGATYLEQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEHHHHCCCHHHHHHCCCC
VSLDLAVSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPA
CEEEEEEEHHHHHHCCCEEEEEEEECCCCCCCCEEEECCCCCCEEEEEEHHHHHHCCCCC
APGDLAAHRCLRFPYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALV
CCHHHHHHHHHHCHHHCCCCCCCCCCCCCCCEECCCCEEECHHHHHHHHHHCCCCCEEEE
PMWLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFLAQRMPGA
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
PGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]