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The map label for this gene is xylR [C]

Identifier: 76817405

GI number: 76817405

Start: 2417356

End: 2418282

Strand: Direct

Name: xylR [C]

Synonym: BURPS1710b_A1980

Alternate gene names: 76817405

Gene position: 2417356-2418282 (Clockwise)

Preceding gene: 76817291

Following gene: 76818600

Centisome position: 75.98

GC content: 71.74

Gene sequence:

>927_bases
ATGAACTGCACCGATCTTGCCCCGACAAGCCTGCGCGAAGCGTTTCGCGGCGCGACGATCGAGACGATCGACGCGCGCGT
CGAAGGCCATGCGAGCGTCGTGCTCACGCGGGTGAGCCATGCGGCGCACGGCTTCGGCTTCGTCGAGTTCATGCCGCCCG
CCGACGGCTATCTGGTGGGCATGTCGCTGACGCCGCCCGCCGCGCGCGCGCCACGCGCGGCGCCGGACGCCGCGGCCGAT
GCCGACGGCGATGCCGACGCGCCGCATCGCGCCGCATGCGTCGCCGTGCAGATCCTGCAGGATGACGAACCGTTTCGCGC
GGACCTGCTGCAGCCGTTCGACATGCTGTTCCATGCGCTGCCGCGCCGCACGCTCGCCGAGCTCGCCGCCGATCTGCGCA
TGGGCGGCGTGCGCGAGCTGGCGAGCCCGGCGGGCGGCCGCGACGCGGTGCTGCAGAGTCTCGTCGGCGTGCTGCTCGCC
GCATCGGCGGGATCGTCCGCGCGCAGCCCGCTGCTCGCGGGCCACGTCGCGCGCGCGATGCAGATCCACATCGTGCAGCA
ATACGGCGTGGCCGCGCCGAGCACGCCCGCGAAGGGCGGGCTCGCCGGCTGGCAGCTCGAGCGGGCGAAAGCGATCCTCA
CCGAGAACATCGCGGGCGAGGTGCCGATCTCGCAGGTCGCGTCCGCGTGCGGCCTGTCGCGCAGCTACTTCATCAAGGCG
TTTCGGCAGACGGTCGGCACGACGCCGCATCGCTGGCTGCTCGAGCACAAGATCGAGCGCGTGAAGCGCAGCCTGCTGTC
GCAGTCCGCGCCGATCGCCGATATCGCGCATCAGTGCGGCTTCTCGGATCAGGCGCACCTGACGCGTGTCTTCACGAGCA
TGATCGGCACGCCGCCCGCCGCGTGGCGCCGTGTGAACCGCCCATAG

Upstream 100 bases:

>100_bases
CTATCGACGGATGCAATCGACCTCTATCCTTGACTCGACTGAAGGAATTGCCATGGGGCGACCCGCCGACACCGTAGCCA
GCATACCGCCGAGCCCGACG

Downstream 100 bases:

>100_bases
CCGAAACGCTCGCTCGCACGCGGGGCGATGCGCGCGCGTGGCCGCACGCCCGGCCGGATCAGGCGCGCGCGCGCCGGCGC
CACGCGCCGGGCGGCAGGCC

Product: RC149

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNCTDLAPTSLREAFRGATIETIDARVEGHASVVLTRVSHAAHGFGFVEFMPPADGYLVGMSLTPPAARAPRAAPDAAAD
ADGDADAPHRAACVAVQILQDDEPFRADLLQPFDMLFHALPRRTLAELAADLRMGGVRELASPAGGRDAVLQSLVGVLLA
ASAGSSARSPLLAGHVARAMQIHIVQQYGVAAPSTPAKGGLAGWQLERAKAILTENIAGEVPISQVASACGLSRSYFIKA
FRQTVGTTPHRWLLEHKIERVKRSLLSQSAPIADIAHQCGFSDQAHLTRVFTSMIGTPPAAWRRVNRP

Sequences:

>Translated_308_residues
MNCTDLAPTSLREAFRGATIETIDARVEGHASVVLTRVSHAAHGFGFVEFMPPADGYLVGMSLTPPAARAPRAAPDAAAD
ADGDADAPHRAACVAVQILQDDEPFRADLLQPFDMLFHALPRRTLAELAADLRMGGVRELASPAGGRDAVLQSLVGVLLA
ASAGSSARSPLLAGHVARAMQIHIVQQYGVAAPSTPAKGGLAGWQLERAKAILTENIAGEVPISQVASACGLSRSYFIKA
FRQTVGTTPHRWLLEHKIERVKRSLLSQSAPIADIAHQCGFSDQAHLTRVFTSMIGTPPAAWRRVNRP
>Mature_308_residues
MNCTDLAPTSLREAFRGATIETIDARVEGHASVVLTRVSHAAHGFGFVEFMPPADGYLVGMSLTPPAARAPRAAPDAAAD
ADGDADAPHRAACVAVQILQDDEPFRADLLQPFDMLFHALPRRTLAELAADLRMGGVRELASPAGGRDAVLQSLVGVLLA
ASAGSSARSPLLAGHVARAMQIHIVQQYGVAAPSTPAKGGLAGWQLERAKAILTENIAGEVPISQVASACGLSRSYFIKA
FRQTVGTTPHRWLLEHKIERVKRSLLSQSAPIADIAHQCGFSDQAHLTRVFTSMIGTPPAAWRRVNRP

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32681; Mature: 32681

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCTDLAPTSLREAFRGATIETIDARVEGHASVVLTRVSHAAHGFGFVEFMPPADGYLVG
CCCCCCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEE
MSLTPPAARAPRAAPDAAADADGDADAPHRAACVAVQILQDDEPFRADLLQPFDMLFHAL
EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
PRRTLAELAADLRMGGVRELASPAGGRDAVLQSLVGVLLAASAGSSARSPLLAGHVARAM
CHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
QIHIVQQYGVAAPSTPAKGGLAGWQLERAKAILTENIAGEVPISQVASACGLSRSYFIKA
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
FRQTVGTTPHRWLLEHKIERVKRSLLSQSAPIADIAHQCGFSDQAHLTRVFTSMIGTPPA
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
AWRRVNRP
HHHCCCCC
>Mature Secondary Structure
MNCTDLAPTSLREAFRGATIETIDARVEGHASVVLTRVSHAAHGFGFVEFMPPADGYLVG
CCCCCCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEE
MSLTPPAARAPRAAPDAAADADGDADAPHRAACVAVQILQDDEPFRADLLQPFDMLFHAL
EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
PRRTLAELAADLRMGGVRELASPAGGRDAVLQSLVGVLLAASAGSSARSPLLAGHVARAM
CHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
QIHIVQQYGVAAPSTPAKGGLAGWQLERAKAILTENIAGEVPISQVASACGLSRSYFIKA
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
FRQTVGTTPHRWLLEHKIERVKRSLLSQSAPIADIAHQCGFSDQAHLTRVFTSMIGTPPA
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
AWRRVNRP
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]