Click here to switch to the map view.

The map label for this gene is ymdC [H]

Identifier: 76818434

GI number: 76818434

Start: 1242651

End: 1244438

Strand: Direct

Name: ymdC [H]

Synonym: BURPS1710b_A0978

Alternate gene names: 76818434

Gene position: 1242651-1244438 (Clockwise)

Preceding gene: 76817343

Following gene: 76818500

Centisome position: 39.06

GC content: 70.41

Gene sequence:

>1788_bases
ATGGTACACCGGCCGGCGCGCGGCTCGGTTGACCCGCGTCGGCGGCGCCACTTAGAATGCCTTCGCGCGGTGCACCGGCC
TGCCGCGCCGTCGATTCGACGTTTCGTTCCGACCGATGCCCGAAGGAGTCCCAACGTGCCGGATCGCCCCGCCCTCCGCG
GTCTCGCGCCGCGCCATCCACCGCGCATCGTCAAGGCCGCCGCGCGCGCGCTCGTCCTGTGCGCGGCGCTCGCGCTCTCC
GGCTGCGCGACGCATCCGCCCGCCACCACGCTCGAGCGCACCGTCTCCCACGCGCTGCCGCCCGACGCATCGACGCCGCT
CGCCGACGCGCTCGCCGTGCAGGCGCGCGCGCATCCGGGCGAATCGGGCTTCGTCGTGCTGCCGCGCGGCGACGAGGCGC
TGCAAATGCGGATCGCGGTGGCGCGCGCGGCGACGAAGACGCTCGACATCCAGTACTACATCGCCGCCGAGGACACGACG
GGCAAGCTGCTGCTCGGCGCCGCGCTGTACGCGGCCGACCGCGGCGTGCGCGTGCGCATGCTCGTCGACGCGCTGAACTT
CAAGGACATCGACAAGCTAATGGCGGCGCTCGACGCGCACGCGAACCTCGAAGTCCGCGTGTTCAATCCGTTCGGCGCCC
CGCGCCTCGGCATGTTCGCGCGCACCGCGAACGTCTTCACGCGGATCGACAATTTCACGCGCCGGATGCACAACAAGGCG
ATGATCTCGGACAACCAGATCGCGATCGTCGGCGGCCGCAATCTCGGCGACGAATATTTCAACGCGAGCCCGACGCTGCA
ATTCCGCGACCTCGACGTGCTCGCGGCCGGCCCCGTCACCCGCGCCGTCTCGGCGAGCTTCGACGCGTACTGGTCGAGCG
CGCTCACGTATCCGCTGCCGGCGCTGAATCGCCGGCGCTACGACGCGAAGGATCTGGACGCGGCGCGCGACGCGCTGCGC
GCGCACTGGCGCGCGAACGCGACGCCGTACAACGCGAAGCCGCTGAACGCGACGCCGCTCGCCGCGCAGATCGCGCGCAA
CGAGCTCGGCCTGGTATGGGCGAGCGCGGAGTTCACCGCCGATTCGCCCGAGAAGATCGCCGCGCCCGACGACAGCTACA
AGAGCCCGCCGATGCAGCGGCTCTTCGCGCTCACGCGCGACGCGCAGCGCGAATTCCTCGTGCTGTCGCCGTATTTCGTT
CCGCACGATGCCGGCGTGAACGCGCTCGGCCGGCTGACCGCGCGCGGCGTGCGCGTCGCGATCCTGACGAATTCGCTCGC
GGCGACGGACGCGATCGCCGTGCAGGCGGGCTACGCGCCGTATCGCGTGCCGATGCTCGAGCGCGGCGTCGAGCTGTACG
AATACAAGCCGGACCCGGGCCGCTCGCGCATCGGCATGCTGGGTTCGCGCTCGCGCGCGAGCCTGCACGCGAAGGCGTAC
GTGATCGACCGGAAGATTCTCGTGATCGGCTCGATGAACCTCGATCCGCGCTCCGCGCATCTGAACACGGAGCTCGCGCT
CGTGATCCACAGCCCGCGGCTCGCGAACGAAGTCGCGAATCTGTTCGACGAAGTGACGAAGCCGACGATCAGCTACCGCG
TGACGCTCGCGCCCGACACGCCGGGCGCGGCGCAGACGACCGGCGCGGGCGCGCCGGCATGGCCGCTCGTGTGGACCGAA
ATCGCCGACGGCCAGGTACGCACGTACAGCGTCGATCCGAACGCGGGCTTCTATCGCAACCTGCTCACGGGGCTCTGCCT
GCTGCTGCCGATCGACGATCAGCTTTGA

Upstream 100 bases:

>100_bases
CCGGCCGCGTGCGCGGCGGCGAGCCGACTGGTCTCGAATGACGGGGCGGATGCCGGATGGGTCATGACAGCCTTGCAGGC
GCGGAAATCGGACTCGTCAG

Downstream 100 bases:

>100_bases
TCGCGACGCGCCACGGCGCAGCGCGACGCGGCGCATGCCCGTGCGCGCCGCCGGGCCCGCCGGCGCTCACAGCGCCGTGC
GGATACGCGCGGCGAGCGCC

Product: phospholipase D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 595; Mature: 595

Protein sequence:

>595_residues
MVHRPARGSVDPRRRRHLECLRAVHRPAAPSIRRFVPTDARRSPNVPDRPALRGLAPRHPPRIVKAAARALVLCAALALS
GCATHPPATTLERTVSHALPPDASTPLADALAVQARAHPGESGFVVLPRGDEALQMRIAVARAATKTLDIQYYIAAEDTT
GKLLLGAALYAADRGVRVRMLVDALNFKDIDKLMAALDAHANLEVRVFNPFGAPRLGMFARTANVFTRIDNFTRRMHNKA
MISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSASFDAYWSSALTYPLPALNRRRYDAKDLDAARDALR
AHWRANATPYNAKPLNATPLAAQIARNELGLVWASAEFTADSPEKIAAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFV
PHDAGVNALGRLTARGVRVAILTNSLAATDAIAVQAGYAPYRVPMLERGVELYEYKPDPGRSRIGMLGSRSRASLHAKAY
VIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEVTKPTISYRVTLAPDTPGAAQTTGAGAPAWPLVWTE
IADGQVRTYSVDPNAGFYRNLLTGLCLLLPIDDQL

Sequences:

>Translated_595_residues
MVHRPARGSVDPRRRRHLECLRAVHRPAAPSIRRFVPTDARRSPNVPDRPALRGLAPRHPPRIVKAAARALVLCAALALS
GCATHPPATTLERTVSHALPPDASTPLADALAVQARAHPGESGFVVLPRGDEALQMRIAVARAATKTLDIQYYIAAEDTT
GKLLLGAALYAADRGVRVRMLVDALNFKDIDKLMAALDAHANLEVRVFNPFGAPRLGMFARTANVFTRIDNFTRRMHNKA
MISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSASFDAYWSSALTYPLPALNRRRYDAKDLDAARDALR
AHWRANATPYNAKPLNATPLAAQIARNELGLVWASAEFTADSPEKIAAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFV
PHDAGVNALGRLTARGVRVAILTNSLAATDAIAVQAGYAPYRVPMLERGVELYEYKPDPGRSRIGMLGSRSRASLHAKAY
VIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEVTKPTISYRVTLAPDTPGAAQTTGAGAPAWPLVWTE
IADGQVRTYSVDPNAGFYRNLLTGLCLLLPIDDQL
>Mature_595_residues
MVHRPARGSVDPRRRRHLECLRAVHRPAAPSIRRFVPTDARRSPNVPDRPALRGLAPRHPPRIVKAAARALVLCAALALS
GCATHPPATTLERTVSHALPPDASTPLADALAVQARAHPGESGFVVLPRGDEALQMRIAVARAATKTLDIQYYIAAEDTT
GKLLLGAALYAADRGVRVRMLVDALNFKDIDKLMAALDAHANLEVRVFNPFGAPRLGMFARTANVFTRIDNFTRRMHNKA
MISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSASFDAYWSSALTYPLPALNRRRYDAKDLDAARDALR
AHWRANATPYNAKPLNATPLAAQIARNELGLVWASAEFTADSPEKIAAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFV
PHDAGVNALGRLTARGVRVAILTNSLAATDAIAVQAGYAPYRVPMLERGVELYEYKPDPGRSRIGMLGSRSRASLHAKAY
VIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEVTKPTISYRVTLAPDTPGAAQTTGAGAPAWPLVWTE
IADGQVRTYSVDPNAGFYRNLLTGLCLLLPIDDQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=422, Percent_Identity=40.2843601895735, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI1787007, Length=368, Percent_Identity=27.445652173913, Blast_Score=92, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64791; Mature: 64791

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHRPARGSVDPRRRRHLECLRAVHRPAAPSIRRFVPTDARRSPNVPDRPALRGLAPRHP
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCHHCCCCCCCC
PRIVKAAARALVLCAALALSGCATHPPATTLERTVSHALPPDASTPLADALAVQARAHPG
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
ESGFVVLPRGDEALQMRIAVARAATKTLDIQYYIAAEDTTGKLLLGAALYAADRGVRVRM
CCCEEEEECCCHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCHHHHHHHHCCCCCEEEE
LVDALNFKDIDKLMAALDAHANLEVRVFNPFGAPRLGMFARTANVFTRIDNFTRRMHNKA
EEHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCE
MISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSASFDAYWSSALTYPLP
EECCCCEEEEECCCCCHHHCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHCCCCCCCC
ALNRRRYDAKDLDAARDALRAHWRANATPYNAKPLNATPLAAQIARNELGLVWASAEFTA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCC
DSPEKIAAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFVPHDAGVNALGRLTARGVRVA
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCEECCCCCCCHHHHHHHHCCEEEE
ILTNSLAATDAIAVQAGYAPYRVPMLERGVELYEYKPDPGRSRIGMLGSRSRASLHAKAY
EEECCHHHCCEEEEECCCCCEECCHHHCCCEEEEECCCCCCCHHCCCCCCCCCCCEEEEE
VIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEVTKPTISYRVTLAPDT
EEEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCCC
PGAAQTTGAGAPAWPLVWTEIADGQVRTYSVDPNAGFYRNLLTGLCLLLPIDDQL
CCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHEEEEECCCCC
>Mature Secondary Structure
MVHRPARGSVDPRRRRHLECLRAVHRPAAPSIRRFVPTDARRSPNVPDRPALRGLAPRHP
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCHHCCCCCCCC
PRIVKAAARALVLCAALALSGCATHPPATTLERTVSHALPPDASTPLADALAVQARAHPG
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
ESGFVVLPRGDEALQMRIAVARAATKTLDIQYYIAAEDTTGKLLLGAALYAADRGVRVRM
CCCEEEEECCCHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCHHHHHHHHCCCCCEEEE
LVDALNFKDIDKLMAALDAHANLEVRVFNPFGAPRLGMFARTANVFTRIDNFTRRMHNKA
EEHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCE
MISDNQIAIVGGRNLGDEYFNASPTLQFRDLDVLAAGPVTRAVSASFDAYWSSALTYPLP
EECCCCEEEEECCCCCHHHCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHCCCCCCCC
ALNRRRYDAKDLDAARDALRAHWRANATPYNAKPLNATPLAAQIARNELGLVWASAEFTA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCC
DSPEKIAAPDDSYKSPPMQRLFALTRDAQREFLVLSPYFVPHDAGVNALGRLTARGVRVA
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCEECCCCCCCHHHHHHHHCCEEEE
ILTNSLAATDAIAVQAGYAPYRVPMLERGVELYEYKPDPGRSRIGMLGSRSRASLHAKAY
EEECCHHHCCEEEEECCCCCEECCHHHCCCEEEEECCCCCCCHHCCCCCCCCCCCEEEEE
VIDRKILVIGSMNLDPRSAHLNTELALVIHSPRLANEVANLFDEVTKPTISYRVTLAPDT
EEEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCCC
PGAAQTTGAGAPAWPLVWTEIADGQVRTYSVDPNAGFYRNLLTGLCLLLPIDDQL
CCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]