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The map label for this gene is sctD

Identifier: 76817282

GI number: 76817282

Start: 600862

End: 602106

Strand: Direct

Name: sctD

Synonym: BURPS1710b_A0432

Alternate gene names: NA

Gene position: 600862-602106 (Clockwise)

Preceding gene: 76818013

Following gene: 76817495

Centisome position: 18.88

GC content: 65.14

Gene sequence:

>1245_bases
ATGACGCGCAAGCGGAACCGACACCGGCACCTCCCGCCTCATCGAGCGAATGACGGATGCATTCTTTCGCATACCCCTGG
TCGATTTCGTATTTACGGAAAAAGAGCCGACACGCGTCTCTATACTGTCGAGCAATCGGCGGATATCCGGAATCTGGATC
ACCACCACTTTCCGTCCTTGCCCTGGAATGAGACCATGAAGCTGTTACGGATACTGACCGGTGTGCACGCGGGCGCGCAG
TTGCAGCTTGCGCCCGGCACGCACCGCATCGGGTCGGACGACGGCGCCGACATCCGCTTGACCGACTGGCATGCCGCCGA
TCTTCTGCTGCACGTCAAAGACGACGTCGTACGCGCACAGTTCGTCGAAACGGATGCCGAAAGGGCGCCATCCGCTTCGG
ATTCGTCCGAAACCGTCCTGTTCGTCGACCTGGCGCCGATGCAGTTCGATGCAACGGTTCTCTGCGTGGGCCCCGATTCG
AGCGCATGGCCGTCCGACTTCGACCTGCTGTCGACGCTGATCTTGCGGCGTGCGCCCCAGCCGCTCTGGCGCCATCGTTA
CGCGCGTACGGCGACGGCATGCATTGCGCTCGGGTCCGTCATGCTTGCCGTCGCGGCAATCTCCACGTCCCAAACGAGCC
GAGCCGCACCTGCGCCGAACGTCGGGTATCGCGCCCAGCGCATCGTCGATGCGCTCGCCGCCGCTCATATCGACGGGCTG
CAGGCACGCCCGATCGGCGATGCCGTCGTCGTCACCGGGATGGTCGCGCACGCAGCCGATGCCGCCACGGTGCGCACGCT
GCTTGCGAGCATCGCATCGTCCGGCATCGTGAGCCGATACGACATCGCGCAACAGGTTTCGCACAACATCGAGGATTCGC
TCGGCGTTCCCGGCGCGCAAGTCGAGTATGCGGGCAAAGGCCGCTTTGTCGTGAAAGGTCCGCCCGGCCGCCATGAAGCG
CTCGAAGCGGCCGTCGCGAGGGTGCGCTCCGATCTCGACCCCAACGTCACGGGAGTCACCGTCGCCGCGCCGGAATCGGC
GGCGGAAACGGCGGCGGAAAACTCGGCGTCGTATGCGGAAATGGTCGCGGCGGACGGCGTGCAATACGCGCAGACTTCGG
ACGGCGTGAAACATATCTACGTGGCCGACACGCCCGCCCAGGCCGGCGACAACGTCCCCATGCGCGGCAACGCGCGTTCT
GCAACCCGCGACGTGCCCCCGCTTCCGCCCAATATGCCGGACTGA

Upstream 100 bases:

>100_bases
TTGCAGGCGGGCATGCCGAGAACAGCCATCCGCCTCGATTGCGCGATCGCCAAGCTGCTCGCGATCCGCAACGCACTGCC
TGACAATCCGCTAGCAACAG

Downstream 100 bases:

>100_bases
TCACCGCGGTCAATCGCATGCCGCAGCTACGCCTACTTTCGGGAGAATGCTTCAATGTATGAGCCGCTAGAACCTTTTGC
ACAAGACTTCAACGAAGTCC

Product: secretion-associated protein

Products: NA

Alternate protein names: HrpD5 Protein; HRPW Transmembrane Protein; Hrpw Protein; Type III Secretion -Like Protein; Type III Secretion Apparatus Protein; Type III Secretion Protein SctD; Serine Protease

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MTRKRNRHRHLPPHRANDGCILSHTPGRFRIYGKRADTRLYTVEQSADIRNLDHHHFPSLPWNETMKLLRILTGVHAGAQ
LQLAPGTHRIGSDDGADIRLTDWHAADLLLHVKDDVVRAQFVETDAERAPSASDSSETVLFVDLAPMQFDATVLCVGPDS
SAWPSDFDLLSTLILRRAPQPLWRHRYARTATACIALGSVMLAVAAISTSQTSRAAPAPNVGYRAQRIVDALAAAHIDGL
QARPIGDAVVVTGMVAHAADAATVRTLLASIASSGIVSRYDIAQQVSHNIEDSLGVPGAQVEYAGKGRFVVKGPPGRHEA
LEAAVARVRSDLDPNVTGVTVAAPESAAETAAENSASYAEMVAADGVQYAQTSDGVKHIYVADTPAQAGDNVPMRGNARS
ATRDVPPLPPNMPD

Sequences:

>Translated_414_residues
MTRKRNRHRHLPPHRANDGCILSHTPGRFRIYGKRADTRLYTVEQSADIRNLDHHHFPSLPWNETMKLLRILTGVHAGAQ
LQLAPGTHRIGSDDGADIRLTDWHAADLLLHVKDDVVRAQFVETDAERAPSASDSSETVLFVDLAPMQFDATVLCVGPDS
SAWPSDFDLLSTLILRRAPQPLWRHRYARTATACIALGSVMLAVAAISTSQTSRAAPAPNVGYRAQRIVDALAAAHIDGL
QARPIGDAVVVTGMVAHAADAATVRTLLASIASSGIVSRYDIAQQVSHNIEDSLGVPGAQVEYAGKGRFVVKGPPGRHEA
LEAAVARVRSDLDPNVTGVTVAAPESAAETAAENSASYAEMVAADGVQYAQTSDGVKHIYVADTPAQAGDNVPMRGNARS
ATRDVPPLPPNMPD
>Mature_413_residues
TRKRNRHRHLPPHRANDGCILSHTPGRFRIYGKRADTRLYTVEQSADIRNLDHHHFPSLPWNETMKLLRILTGVHAGAQL
QLAPGTHRIGSDDGADIRLTDWHAADLLLHVKDDVVRAQFVETDAERAPSASDSSETVLFVDLAPMQFDATVLCVGPDSS
AWPSDFDLLSTLILRRAPQPLWRHRYARTATACIALGSVMLAVAAISTSQTSRAAPAPNVGYRAQRIVDALAAAHIDGLQ
ARPIGDAVVVTGMVAHAADAATVRTLLASIASSGIVSRYDIAQQVSHNIEDSLGVPGAQVEYAGKGRFVVKGPPGRHEAL
EAAVARVRSDLDPNVTGVTVAAPESAAETAAENSASYAEMVAADGVQYAQTSDGVKHIYVADTPAQAGDNVPMRGNARSA
TRDVPPLPPNMPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44276; Mature: 44145

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKRNRHRHLPPHRANDGCILSHTPGRFRIYGKRADTRLYTVEQSADIRNLDHHHFPSL
CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
PWNETMKLLRILTGVHAGAQLQLAPGTHRIGSDDGADIRLTDWHAADLLLHVKDDVVRAQ
CHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCHHHEEEEEHHHHHHHH
FVETDAERAPSASDSSETVLFVDLAPMQFDATVLCVGPDSSAWPSDFDLLSTLILRRAPQ
HHHHHHHHCCCCCCCCCEEEEEEECCCEECCEEEEECCCCCCCCCHHHHHHHHHHHCCCC
PLWRHRYARTATACIALGSVMLAVAAISTSQTSRAAPAPNVGYRAQRIVDALAAAHIDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
QARPIGDAVVVTGMVAHAADAATVRTLLASIASSGIVSRYDIAQQVSHNIEDSLGVPGAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHCCCCCCE
VEYAGKGRFVVKGPPGRHEALEAAVARVRSDLDPNVTGVTVAAPESAAETAAENSASYAE
EEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCHHHHH
MVAADGVQYAQTSDGVKHIYVADTPAQAGDNVPMRGNARSATRDVPPLPPNMPD
HHHHCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRKRNRHRHLPPHRANDGCILSHTPGRFRIYGKRADTRLYTVEQSADIRNLDHHHFPSL
CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
PWNETMKLLRILTGVHAGAQLQLAPGTHRIGSDDGADIRLTDWHAADLLLHVKDDVVRAQ
CHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCHHHEEEEEHHHHHHHH
FVETDAERAPSASDSSETVLFVDLAPMQFDATVLCVGPDSSAWPSDFDLLSTLILRRAPQ
HHHHHHHHCCCCCCCCCEEEEEEECCCEECCEEEEECCCCCCCCCHHHHHHHHHHHCCCC
PLWRHRYARTATACIALGSVMLAVAAISTSQTSRAAPAPNVGYRAQRIVDALAAAHIDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
QARPIGDAVVVTGMVAHAADAATVRTLLASIASSGIVSRYDIAQQVSHNIEDSLGVPGAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHCCCCCCE
VEYAGKGRFVVKGPPGRHEALEAAVARVRSDLDPNVTGVTVAAPESAAETAAENSASYAE
EEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCHHHHH
MVAADGVQYAQTSDGVKHIYVADTPAQAGDNVPMRGNARSATRDVPPLPPNMPD
HHHHCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA