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The map label for this gene is ybfI [H]

Identifier: 76817421

GI number: 76817421

Start: 490679

End: 491977

Strand: Direct

Name: ybfI [H]

Synonym: BURPS1710b_A0342

Alternate gene names: 76817421

Gene position: 490679-491977 (Clockwise)

Preceding gene: 76819299

Following gene: 76818728

Centisome position: 15.42

GC content: 67.36

Gene sequence:

>1299_bases
ATGGACGCCCGATATCCCGGCGATTCGAATTATCGATTCGCACAGATTTTGTGCTTTAACGCGGAAACGTATTTTCGTGG
TGCATCGCCCTGCACAAGAAAATATCGCGCACGGCGATCCCGATTCGCGGTGCGCGCGCCTCAGGCTCGCGCGAGCGAAC
CGCGCGCGGCGGTGCCGGACGCCCGTTTCGCATCGCCGCGGCGATTCCCACTAGAATGGTGTCCGTCGGCGCACGGCGCG
CGAGCGGCGGCGACCGGCGCGGCCGCGCGGCACGGTATGAAACTTGCGTCTCATGGATGGCGCGCGCCCCGCGCACACAT
GCCGACGACATCGAAACACCCGCCGGCGTGCGCGGCGCCCAGCACGCGCACGGAGCGGCCTCGCCCGCCGCCGGCTGTTT
CGTTTCATCGGAATCGGGGTTCGACCGTGGCCAAGCTAGACCATCGCAACCAGTCGCGTTACTGGCACTCTCCCGGCATT
TCAGGGGTCGATCTGTTGCTCGCCGACTTCACGACGCACGACTACGCGCCGCACGTGCACGATTCGCTTGTCGTCGCCGT
CACGGAAGTCGGCGGTTCGGTGTTCAAGAGCCGCGGGCAGACGCGCCTCGCCGAGCCGAACGCCGTGCTCGTGTTCAATC
CGTGCGAGCCGCATTCGGGGCGCATGGGCGGCAGCAGCCGCTGGCGCTACCGGTCGTTCTACCTCGCGGAAGCGGGCCTT
TCCCGCGTGCTGACGTTGCTCGGCATGACGCAGCCGCGCTTTTTCACGTCGAACGTGCTCGACGATCCTCAGCTCGTCGA
ACAGTTTCTCACCCTGCACCGCGCGATGGACGAGCAGGACGATCTGCTGCGGCAGCAGGAACTGCTCGTCAGCAGCTTCG
GCACGCTGTTTTCGCGGCACGGGCTCCAGGCCGGGCTCGGCGCCGGCCCCGGCTTCGGCACGAAGGCGGGCCTGCCGGCG
CTCAAGCCCGCGCTCGATCTGATGAACGATTGCTTCGACCACGCGCTCACCCTCGAGCAGATCGCGGCGGCGGCGGGCCT
CACGTCGTTCCAGCTGATCACCGCGTTCAACCGCGTGATCGGCCTCACACCGCACGCGTACCTGAACCAGTTGAGGTTGC
GCGCGGCGCTGCGCGAGCTGCAGGCCGGCCGCTCGCTCGCCGACGCCGCGCTGACATCGGGCTTCTACGATCAAAGCGCG
CTTTGCAACCACTTCAAGCGCACGTTCGGGATGACGCCGATGCAGTACACGCGCGCGCTCGCGCCCGGCAAGCGCGCGCT
CGCGCCGATCGGAATCTGA

Upstream 100 bases:

>100_bases
TCCCCTTTCGGCGGATTTTTGCCACACAAATATCGGACAATCCGGAAAAGGCGGCCAAATTGACATCGGCATTTATTATT
GGCCAGCGTTTTCGCTTTTA

Downstream 100 bases:

>100_bases
CGGCAACGGCCGCAGCCCGGCCGGCCGCCGCGCGGTTGCGCGCCGGACGCTCCGGCTCGTTCGGCTCATCAGGCTCGTCC
AGCGCGTCCGGCTCGACCAG

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MDARYPGDSNYRFAQILCFNAETYFRGASPCTRKYRARRSRFAVRAPQARASEPRAAVPDARFASPRRFPLEWCPSAHGA
RAAATGAAARHGMKLASHGWRAPRAHMPTTSKHPPACAAPSTRTERPRPPPAVSFHRNRGSTVAKLDHRNQSRYWHSPGI
SGVDLLLADFTTHDYAPHVHDSLVVAVTEVGGSVFKSRGQTRLAEPNAVLVFNPCEPHSGRMGGSSRWRYRSFYLAEAGL
SRVLTLLGMTQPRFFTSNVLDDPQLVEQFLTLHRAMDEQDDLLRQQELLVSSFGTLFSRHGLQAGLGAGPGFGTKAGLPA
LKPALDLMNDCFDHALTLEQIAAAAGLTSFQLITAFNRVIGLTPHAYLNQLRLRAALRELQAGRSLADAALTSGFYDQSA
LCNHFKRTFGMTPMQYTRALAPGKRALAPIGI

Sequences:

>Translated_432_residues
MDARYPGDSNYRFAQILCFNAETYFRGASPCTRKYRARRSRFAVRAPQARASEPRAAVPDARFASPRRFPLEWCPSAHGA
RAAATGAAARHGMKLASHGWRAPRAHMPTTSKHPPACAAPSTRTERPRPPPAVSFHRNRGSTVAKLDHRNQSRYWHSPGI
SGVDLLLADFTTHDYAPHVHDSLVVAVTEVGGSVFKSRGQTRLAEPNAVLVFNPCEPHSGRMGGSSRWRYRSFYLAEAGL
SRVLTLLGMTQPRFFTSNVLDDPQLVEQFLTLHRAMDEQDDLLRQQELLVSSFGTLFSRHGLQAGLGAGPGFGTKAGLPA
LKPALDLMNDCFDHALTLEQIAAAAGLTSFQLITAFNRVIGLTPHAYLNQLRLRAALRELQAGRSLADAALTSGFYDQSA
LCNHFKRTFGMTPMQYTRALAPGKRALAPIGI
>Mature_432_residues
MDARYPGDSNYRFAQILCFNAETYFRGASPCTRKYRARRSRFAVRAPQARASEPRAAVPDARFASPRRFPLEWCPSAHGA
RAAATGAAARHGMKLASHGWRAPRAHMPTTSKHPPACAAPSTRTERPRPPPAVSFHRNRGSTVAKLDHRNQSRYWHSPGI
SGVDLLLADFTTHDYAPHVHDSLVVAVTEVGGSVFKSRGQTRLAEPNAVLVFNPCEPHSGRMGGSSRWRYRSFYLAEAGL
SRVLTLLGMTQPRFFTSNVLDDPQLVEQFLTLHRAMDEQDDLLRQQELLVSSFGTLFSRHGLQAGLGAGPGFGTKAGLPA
LKPALDLMNDCFDHALTLEQIAAAAGLTSFQLITAFNRVIGLTPHAYLNQLRLRAALRELQAGRSLADAALTSGFYDQSA
LCNHFKRTFGMTPMQYTRALAPGKRALAPIGI

Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 47397; Mature: 47397

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDARYPGDSNYRFAQILCFNAETYFRGASPCTRKYRARRSRFAVRAPQARASEPRAAVPD
CCCCCCCCCCCEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
ARFASPRRFPLEWCPSAHGARAAATGAAARHGMKLASHGWRAPRAHMPTTSKHPPACAAP
CCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
STRTERPRPPPAVSFHRNRGSTVAKLDHRNQSRYWHSPGISGVDLLLADFTTHDYAPHVH
CCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCC
DSLVVAVTEVGGSVFKSRGQTRLAEPNAVLVFNPCEPHSGRMGGSSRWRYRSFYLAEAGL
CHHEEEHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
SRVLTLLGMTQPRFFTSNVLDDPQLVEQFLTLHRAMDEQDDLLRQQELLVSSFGTLFSRH
HHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
GLQAGLGAGPGFGTKAGLPALKPALDLMNDCFDHALTLEQIAAAAGLTSFQLITAFNRVI
CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
GLTPHAYLNQLRLRAALRELQAGRSLADAALTSGFYDQSALCNHFKRTFGMTPMQYTRAL
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
APGKRALAPIGI
CCCCCCCCCCCC
>Mature Secondary Structure
MDARYPGDSNYRFAQILCFNAETYFRGASPCTRKYRARRSRFAVRAPQARASEPRAAVPD
CCCCCCCCCCCEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
ARFASPRRFPLEWCPSAHGARAAATGAAARHGMKLASHGWRAPRAHMPTTSKHPPACAAP
CCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
STRTERPRPPPAVSFHRNRGSTVAKLDHRNQSRYWHSPGISGVDLLLADFTTHDYAPHVH
CCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCC
DSLVVAVTEVGGSVFKSRGQTRLAEPNAVLVFNPCEPHSGRMGGSSRWRYRSFYLAEAGL
CHHEEEHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
SRVLTLLGMTQPRFFTSNVLDDPQLVEQFLTLHRAMDEQDDLLRQQELLVSSFGTLFSRH
HHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
GLQAGLGAGPGFGTKAGLPALKPALDLMNDCFDHALTLEQIAAAAGLTSFQLITAFNRVI
CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
GLTPHAYLNQLRLRAALRELQAGRSLADAALTSGFYDQSALCNHFKRTFGMTPMQYTRAL
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
APGKRALAPIGI
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]