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The map label for this gene is yicJ [C]

Identifier: 75909788

GI number: 75909788

Start: 4461544

End: 4462971

Strand: Direct

Name: yicJ [C]

Synonym: Ava_3583

Alternate gene names: 75909788

Gene position: 4461544-4462971 (Clockwise)

Preceding gene: 75909786

Following gene: 75909789

Centisome position: 70.09

GC content: 41.18

Gene sequence:

>1428_bases
ATGAAAAATAGTCAAAAATTAGATTTGAAAACCAAGCTGGCTTACGGTGCCGGTGATTTAGGCCCAGCAATTACCGCTAA
TATTTCTATATTCTTTCTATTAATTTTTTTTACCAACGTTGCTGGTATTCCGGCTGGTTTGGCGGGCAGTGTTTTAATGA
TTGGTAAAATCTGGGACGCTGTTAACGATCCTTTTGTGGGGGTATTGACGGATAAAACTAAGTCTCGGCGCTGGGGTCGT
CGTTTGCCCTGGATGCTTTATGGGGCAATTCCCTTTGGAATTTTCTTTTTCTTACAGTGGATTGTACCGCGATTTAGTAG
CGACCAGGGTAGTAATGTCTGGGCGTTGTTTTGGTATTACGTAGTGATTGGGTTGATTTCCCAGGTGTTTTACACCGTTG
TAAATCTGCCTTATACAGCCCTGACTCCAGAACTTACCCAAGATTATGACGAACGCACTAGCCTCAATAGTTTTCGCTTC
GCCTTTTCTATTGGTGGCAGCATTTTATCTTTAATTTTATCTAAAGTTGTTTTGTCGTTGATTAGCGATCGCCAACAACA
GTATATAGTTTTAGCGGCAATTTGCACCGTCATCTCGGTTATATCATTATATTGGTGCGTGTTTGGGGTGCGCGATCGCG
TATTGGCATTTGAAGCAAAACGTATTCAAATTGAGGACTCTGACTCTATTCCCTTTTTTGAGCAATTAAAAATTGTTTTC
AGCAATCGCCCTTTTCTATTTGTGATTGGCATATATTTGTTTTCTTGGTTAGGAGTACAAATCACAGCCAGCATTATTCC
CTACTTTGTGATCAATTGTATGTCTTTGCCTGAATCAGATATACCCACAACGATGATTGCAGTGCAAGGGACTGCTTTAT
TGATGTTATTTGTCTGGACAGCTTTAAGTAAAAAAATTGGGAAAAAACTTGTTTATTTCTTGGGAATGAGTCTGTGGATT
ATTGCAGCTGCTGGACTCTTTTTCTTACAACCCGGTCAAATCAGTTTAATGTATGTCATGGCTATCATGGCGGGTGTGGG
TGTATCCACAGCTTACTTAGTCCCCTGGTCAATGATTCCCGATGTCATTGAATTGGACGAACTGCAAACTGGACAACGGC
GAGAAGGGATTTTTTACGGCTTCATGGTTTTATTGCAGAAATTTGGTTTAGCGTTCGGCTTATTTCTGGTGGGTAACGCC
TTGCAAGCATCTGGTTTTAAAGAAGCTGTTGCTGGACAAACTACTCTACCAATACAACCAGAATCGGCTCTTTTCGCTAT
CCGTATTGCCGTTGGGCCTTTACCCACCATCTGTTTAATTTTTGGCTTAGTCTTAACCTATTTCTACCCCATTACCCGTG
AAATGCACGCGGAAATTCTGCTAAAACTCCAAGAACGTCAAAAGCAAAGAGAAACACATCCAGAGTGA

Upstream 100 bases:

>100_bases
TGATACTCTGACCAAGAAACGTAAAGGTCTGGCATAAGGTAAGTAGGTTTTAGGTGATACTAAAGGCGATCGCAATATTT
TAATATGAGCGCAAGCCATT

Downstream 100 bases:

>100_bases
TAAGTATAGGACTTACCCATGAAAACGAAAGATCAAGGGTTTGGAGAAGGGTATAGGGGTTTAGGGGTTTAGGGGTATAT
AAGTAATTATTTTATTCCCA

Product: galactoside symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MKNSQKLDLKTKLAYGAGDLGPAITANISIFFLLIFFTNVAGIPAGLAGSVLMIGKIWDAVNDPFVGVLTDKTKSRRWGR
RLPWMLYGAIPFGIFFFLQWIVPRFSSDQGSNVWALFWYYVVIGLISQVFYTVVNLPYTALTPELTQDYDERTSLNSFRF
AFSIGGSILSLILSKVVLSLISDRQQQYIVLAAICTVISVISLYWCVFGVRDRVLAFEAKRIQIEDSDSIPFFEQLKIVF
SNRPFLFVIGIYLFSWLGVQITASIIPYFVINCMSLPESDIPTTMIAVQGTALLMLFVWTALSKKIGKKLVYFLGMSLWI
IAAAGLFFLQPGQISLMYVMAIMAGVGVSTAYLVPWSMIPDVIELDELQTGQRREGIFYGFMVLLQKFGLAFGLFLVGNA
LQASGFKEAVAGQTTLPIQPESALFAIRIAVGPLPTICLIFGLVLTYFYPITREMHAEILLKLQERQKQRETHPE

Sequences:

>Translated_475_residues
MKNSQKLDLKTKLAYGAGDLGPAITANISIFFLLIFFTNVAGIPAGLAGSVLMIGKIWDAVNDPFVGVLTDKTKSRRWGR
RLPWMLYGAIPFGIFFFLQWIVPRFSSDQGSNVWALFWYYVVIGLISQVFYTVVNLPYTALTPELTQDYDERTSLNSFRF
AFSIGGSILSLILSKVVLSLISDRQQQYIVLAAICTVISVISLYWCVFGVRDRVLAFEAKRIQIEDSDSIPFFEQLKIVF
SNRPFLFVIGIYLFSWLGVQITASIIPYFVINCMSLPESDIPTTMIAVQGTALLMLFVWTALSKKIGKKLVYFLGMSLWI
IAAAGLFFLQPGQISLMYVMAIMAGVGVSTAYLVPWSMIPDVIELDELQTGQRREGIFYGFMVLLQKFGLAFGLFLVGNA
LQASGFKEAVAGQTTLPIQPESALFAIRIAVGPLPTICLIFGLVLTYFYPITREMHAEILLKLQERQKQRETHPE
>Mature_475_residues
MKNSQKLDLKTKLAYGAGDLGPAITANISIFFLLIFFTNVAGIPAGLAGSVLMIGKIWDAVNDPFVGVLTDKTKSRRWGR
RLPWMLYGAIPFGIFFFLQWIVPRFSSDQGSNVWALFWYYVVIGLISQVFYTVVNLPYTALTPELTQDYDERTSLNSFRF
AFSIGGSILSLILSKVVLSLISDRQQQYIVLAAICTVISVISLYWCVFGVRDRVLAFEAKRIQIEDSDSIPFFEQLKIVF
SNRPFLFVIGIYLFSWLGVQITASIIPYFVINCMSLPESDIPTTMIAVQGTALLMLFVWTALSKKIGKKLVYFLGMSLWI
IAAAGLFFLQPGQISLMYVMAIMAGVGVSTAYLVPWSMIPDVIELDELQTGQRREGIFYGFMVLLQKFGLAFGLFLVGNA
LQASGFKEAVAGQTTLPIQPESALFAIRIAVGPLPTICLIFGLVLTYFYPITREMHAEILLKLQERQKQRETHPE

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Homo sapiens, GI42713696, Length=497, Percent_Identity=26.1569416498994, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI211063479, Length=515, Percent_Identity=25.4368932038835, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI122937339, Length=473, Percent_Identity=25.7928118393235, Blast_Score=145, Evalue=1e-34,
Organism=Escherichia coli, GI87082306, Length=484, Percent_Identity=28.5123966942149, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI1786466, Length=483, Percent_Identity=27.536231884058, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI145693206, Length=474, Percent_Identity=25.3164556962025, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI48994989, Length=487, Percent_Identity=26.2833675564682, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1790561, Length=485, Percent_Identity=24.3298969072165, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1787902, Length=480, Percent_Identity=26.875, Blast_Score=123, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17567067, Length=484, Percent_Identity=20.4545454545455, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53175; Mature: 53175

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSQKLDLKTKLAYGAGDLGPAITANISIFFLLIFFTNVAGIPAGLAGSVLMIGKIWDA
CCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
VNDPFVGVLTDKTKSRRWGRRLPWMLYGAIPFGIFFFLQWIVPRFSSDQGSNVWALFWYY
CCCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VVIGLISQVFYTVVNLPYTALTPELTQDYDERTSLNSFRFAFSIGGSILSLILSKVVLSL
HHHHHHHHHHHHHHCCCHHHCCCHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ISDRQQQYIVLAAICTVISVISLYWCVFGVRDRVLAFEAKRIQIEDSDSIPFFEQLKIVF
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHH
SNRPFLFVIGIYLFSWLGVQITASIIPYFVINCMSLPESDIPTTMIAVQGTALLMLFVWT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHH
ALSKKIGKKLVYFLGMSLWIIAAAGLFFLQPGQISLMYVMAIMAGVGVSTAYLVPWSMIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCCHHEECCHHHCC
DVIELDELQTGQRREGIFYGFMVLLQKFGLAFGLFLVGNALQASGFKEAVAGQTTLPIQP
CHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHCCCCCCCCCC
ESALFAIRIAVGPLPTICLIFGLVLTYFYPITREMHAEILLKLQERQKQRETHPE
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKNSQKLDLKTKLAYGAGDLGPAITANISIFFLLIFFTNVAGIPAGLAGSVLMIGKIWDA
CCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
VNDPFVGVLTDKTKSRRWGRRLPWMLYGAIPFGIFFFLQWIVPRFSSDQGSNVWALFWYY
CCCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VVIGLISQVFYTVVNLPYTALTPELTQDYDERTSLNSFRFAFSIGGSILSLILSKVVLSL
HHHHHHHHHHHHHHCCCHHHCCCHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ISDRQQQYIVLAAICTVISVISLYWCVFGVRDRVLAFEAKRIQIEDSDSIPFFEQLKIVF
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHH
SNRPFLFVIGIYLFSWLGVQITASIIPYFVINCMSLPESDIPTTMIAVQGTALLMLFVWT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHH
ALSKKIGKKLVYFLGMSLWIIAAAGLFFLQPGQISLMYVMAIMAGVGVSTAYLVPWSMIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCCHHEECCHHHCC
DVIELDELQTGQRREGIFYGFMVLLQKFGLAFGLFLVGNALQASGFKEAVAGQTTLPIQP
CHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHCCCCCCCCCC
ESALFAIRIAVGPLPTICLIFGLVLTYFYPITREMHAEILLKLQERQKQRETHPE
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]