Click here to switch to the map view.

The map label for this gene is 75909786

Identifier: 75909786

GI number: 75909786

Start: 4459977

End: 4460903

Strand: Direct

Name: 75909786

Synonym: Ava_3581

Alternate gene names: NA

Gene position: 4459977-4460903 (Clockwise)

Preceding gene: 75909778

Following gene: 75909788

Centisome position: 70.06

GC content: 43.26

Gene sequence:

>927_bases
TTGATAAATCTCCTAGAACTATACGTCAAACTTGTCAGCTTAGTCTTAGTAGGTTTTATTCTGGGACGCAAGCTACCTAG
TACAGTTCCTACCCGTCTGGGTCAGTTTCTTTTCTGGGTGGGAGTACCGATAAGTATAGTATCTTTTCTCCGACAAACTG
ACTTATCAGGACAAATCTGGATTGCTCCGGCGATCGCATACTTGGCTATTCTACTAGGTGCGTTCTTCGCTTGGCTAGCA
ATCAAAGGACAGACATACTTCAGTAATACAACACCGGAAAAACCTACCCAGGGAAGCTTGTTACTAGCAGCCATGATAGG
TAACACAGGTTACTTAGGCTTTCCCATTACCTTAGCAATGGTAGGTAAAGAATACTTTGCTTGGGCATTATTTTACGATT
TACTGGGGTCTTTTCCTGGTGCTTATGCCTTGGGCGTAGCATTAGGCGCTCATTTCGGTACTAACTTACACAATCACAAC
CAATTTACGCAAGTAACAAGAGCTATTATTATTAATCCGGCTCTATGGAGTTTCGGATTTGGCTTACTATTTCGCCAAAT
AGCCATTCCTGAAATTTTGGAATATGGCTTAGATAAATTTGCCTGGAGTATGGTGGCTTTATCTCTAGTATTAATTGGAA
TGCGCTTAAGCAAACTAAATTCCTTAGCTAACCTACCGCAGGTAGGTATCAGCTTAGGAATCAAAATGCTGATAGTTCCC
CTAATTTTAGGCTACACCTTACCGCTTTTTGGATTAACCGGGCCAGCCGCCAAAGTGATTATCCTGCAAACGGCCATGCC
CCCAGCCTTTGCCTGTCTAGTAATCGCCGAAACTTTCAATTTAGACCACAACCTCGCAGTCACCACAATAGCCGTGGGAG
CTATGTTACTACTCCTAACGCTCCCCATGTGGCTATGGTTGTTTTGA

Upstream 100 bases:

>100_bases
GGTCAACTCCTGGCTTTGTGGAACTCTCATAAAAATTGTAGACTTGATAAGAATAAGCTTATTGGGTAGCATTTTACATC
TATAATTCTTAGGCGCAACA

Downstream 100 bases:

>100_bases
ATTGGTTCAGTTGTCAGTTGCCAATGCTTTTCCTCTACCCCTTCTCATCTTCCCCATCAACAATACTGACCCACCCTAGC
CGCCAAATCTGCGGGATTGA

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MINLLELYVKLVSLVLVGFILGRKLPSTVPTRLGQFLFWVGVPISIVSFLRQTDLSGQIWIAPAIAYLAILLGAFFAWLA
IKGQTYFSNTTPEKPTQGSLLLAAMIGNTGYLGFPITLAMVGKEYFAWALFYDLLGSFPGAYALGVALGAHFGTNLHNHN
QFTQVTRAIIINPALWSFGFGLLFRQIAIPEILEYGLDKFAWSMVALSLVLIGMRLSKLNSLANLPQVGISLGIKMLIVP
LILGYTLPLFGLTGPAAKVIILQTAMPPAFACLVIAETFNLDHNLAVTTIAVGAMLLLLTLPMWLWLF

Sequences:

>Translated_308_residues
MINLLELYVKLVSLVLVGFILGRKLPSTVPTRLGQFLFWVGVPISIVSFLRQTDLSGQIWIAPAIAYLAILLGAFFAWLA
IKGQTYFSNTTPEKPTQGSLLLAAMIGNTGYLGFPITLAMVGKEYFAWALFYDLLGSFPGAYALGVALGAHFGTNLHNHN
QFTQVTRAIIINPALWSFGFGLLFRQIAIPEILEYGLDKFAWSMVALSLVLIGMRLSKLNSLANLPQVGISLGIKMLIVP
LILGYTLPLFGLTGPAAKVIILQTAMPPAFACLVIAETFNLDHNLAVTTIAVGAMLLLLTLPMWLWLF
>Mature_308_residues
MINLLELYVKLVSLVLVGFILGRKLPSTVPTRLGQFLFWVGVPISIVSFLRQTDLSGQIWIAPAIAYLAILLGAFFAWLA
IKGQTYFSNTTPEKPTQGSLLLAAMIGNTGYLGFPITLAMVGKEYFAWALFYDLLGSFPGAYALGVALGAHFGTNLHNHN
QFTQVTRAIIINPALWSFGFGLLFRQIAIPEILEYGLDKFAWSMVALSLVLIGMRLSKLNSLANLPQVGISLGIKMLIVP
LILGYTLPLFGLTGPAAKVIILQTAMPPAFACLVIAETFNLDHNLAVTTIAVGAMLLLLTLPMWLWLF

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776
- InterPro:   IPR014024 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33573; Mature: 33573

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLLELYVKLVSLVLVGFILGRKLPSTVPTRLGQFLFWVGVPISIVSFLRQTDLSGQIW
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEE
IAPAIAYLAILLGAFFAWLAIKGQTYFSNTTPEKPTQGSLLLAAMIGNTGYLGFPITLAM
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH
VGKEYFAWALFYDLLGSFPGAYALGVALGAHFGTNLHNHNQFTQVTRAIIINPALWSFGF
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHH
GLLFRQIAIPEILEYGLDKFAWSMVALSLVLIGMRLSKLNSLANLPQVGISLGIKMLIVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LILGYTLPLFGLTGPAAKVIILQTAMPPAFACLVIAETFNLDHNLAVTTIAVGAMLLLLT
HHHHHHHHHHCCCCCHHEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LPMWLWLF
HHHHHHCC
>Mature Secondary Structure
MINLLELYVKLVSLVLVGFILGRKLPSTVPTRLGQFLFWVGVPISIVSFLRQTDLSGQIW
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEE
IAPAIAYLAILLGAFFAWLAIKGQTYFSNTTPEKPTQGSLLLAAMIGNTGYLGFPITLAM
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH
VGKEYFAWALFYDLLGSFPGAYALGVALGAHFGTNLHNHNQFTQVTRAIIINPALWSFGF
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHH
GLLFRQIAIPEILEYGLDKFAWSMVALSLVLIGMRLSKLNSLANLPQVGISLGIKMLIVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LILGYTLPLFGLTGPAAKVIILQTAMPPAFACLVIAETFNLDHNLAVTTIAVGAMLLLLT
HHHHHHHHHHCCCCCHHEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LPMWLWLF
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]