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The map label for this gene is 75909656

Identifier: 75909656

GI number: 75909656

Start: 4279566

End: 4280090

Strand: Direct

Name: 75909656

Synonym: Ava_3450

Alternate gene names: NA

Gene position: 4279566-4280090 (Clockwise)

Preceding gene: 75909655

Following gene: 75909657

Centisome position: 67.23

GC content: 40.0

Gene sequence:

>525_bases
ATGGATAACAGTCTAGCGGTTGTTTATCTCTCCGTGTTGGTGGGTATACTAGGATTTGCGGTTGTGAGTGTTTTCCGCCA
GCTGTTCAAAACTCGTAAGCGTGAAAGTGCTTTATCTCGATTGCGTAGTAAATTGAGTAAAGACAAGGGTACGGCTCAAG
AATATTTTGAGTTAGCGTGTATTTATTCAGAGAAAAAAGTGTATACACAGGCTATACCTTTGTTTCAAAAGGCTCTGAAA
GCAGCCGAAGAAGAAGGAGAAGAAAATACTGCACCTATTTATAATGGTTTGGGTTACACCTATTTTGCTCAAGAGCAGTA
TGATTTAGCGATTCGTCAGTATAAGGAAGCGCTAAAATTTAAACCCGATTATGTAGTAGCTTTGAATAATTTGGGTCATG
CTTATGAGCGGAAAAAATTGACTGCTCAGGCTTTGCAAATGTATGAAGAAGCACTTAAATGTGACCCCAATAACGCTACT
GCTAAACGTCGTGCGGAATCTTTGCGGCGTTTAGTAACTGCTTGA

Upstream 100 bases:

>100_bases
TCCCCTGCTTCCGCTGCTCCCCTGCTCCCCCTCCTCTTAAGAGTCCCTCAAAGACCCATAATAGAGATAGAAGACACTTT
AATAATTTGATTTGAAGACA

Downstream 100 bases:

>100_bases
TGCTTCTATATCCTAGATCCCCTAGATTCTAGATCCCCGACTTCTCAAAGAAGTCGGGGATCTGTCTTAACTATTCGGTT
TTATATCTGAATTCTGGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Photosystem I Assembly Related Protein Ycf; Tetratricopeptide Repeat Domain Protein; Photosystem I Assembly Protein; Photosystem I Assembly Related Protein; Tetratricopeptide Repeat Protein; TPR Repeat-Containing Photosystem I Assembly Protein Ycf; TPR Domain-Containing Protein

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRSKLSKDKGTAQEYFELACIYSEKKVYTQAIPLFQKALK
AAEEEGEENTAPIYNGLGYTYFAQEQYDLAIRQYKEALKFKPDYVVALNNLGHAYERKKLTAQALQMYEEALKCDPNNAT
AKRRAESLRRLVTA

Sequences:

>Translated_174_residues
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRSKLSKDKGTAQEYFELACIYSEKKVYTQAIPLFQKALK
AAEEEGEENTAPIYNGLGYTYFAQEQYDLAIRQYKEALKFKPDYVVALNNLGHAYERKKLTAQALQMYEEALKCDPNNAT
AKRRAESLRRLVTA
>Mature_174_residues
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRSKLSKDKGTAQEYFELACIYSEKKVYTQAIPLFQKALK
AAEEEGEENTAPIYNGLGYTYFAQEQYDLAIRQYKEALKFKPDYVVALNNLGHAYERKKLTAQALQMYEEALKCDPNNAT
AKRRAESLRRLVTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19822; Mature: 19822

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRSKLSKDKGTAQEYFELAC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IYSEKKVYTQAIPLFQKALKAAEEEGEENTAPIYNGLGYTYFAQEQYDLAIRQYKEALKF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEHHHHHHHHHHHHHHHHHC
KPDYVVALNNLGHAYERKKLTAQALQMYEEALKCDPNNATAKRRAESLRRLVTA
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRSKLSKDKGTAQEYFELAC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IYSEKKVYTQAIPLFQKALKAAEEEGEENTAPIYNGLGYTYFAQEQYDLAIRQYKEALKF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEHHHHHHHHHHHHHHHHHC
KPDYVVALNNLGHAYERKKLTAQALQMYEEALKCDPNNATAKRRAESLRRLVTA
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA