Click here to switch to the map view.

The map label for this gene is rpmH

Identifier: 75909638

GI number: 75909638

Start: 4264832

End: 4264966

Strand: Direct

Name: rpmH

Synonym: Ava_3432

Alternate gene names: 75909638

Gene position: 4264832-4264966 (Clockwise)

Preceding gene: 75909637

Following gene: 75909639

Centisome position: 67.0

GC content: 51.11

Gene sequence:

>135_bases
ATGCAGAGAACGCTTGGTGGGACAAACCGTAAGAGAAAAAGAACTTCTGGGTTCCGTGCCAGAATGCGGACTCCCGATGG
CAGAAACGTCATCAGAGCCAGAAGAAAGAGAGGTCGTCATCGTTTGAGCGTGTAG

Upstream 100 bases:

>100_bases
TACTACTCCCTAATTACCTCTTTATAGACTATTAACTATCCACAGTGATAAGATAATAGATTGTGATTTTTTATAAAAAA
TCGTCTAAGAGGACAAAAGT

Downstream 100 bases:

>100_bases
GGTATTTTAGGCGCAAAGAATAGCTGTGGCATTGCCCAAAGCAAACCGATTAAAATCCCGGCATGATTTTCAGGCAGTTT
TCCGAGAAGGGCTGAGACGA

Product: 50S ribosomal protein L34

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 44; Mature: 44

Protein sequence:

>44_residues
MQRTLGGTNRKRKRTSGFRARMRTPDGRNVIRARRKRGRHRLSV

Sequences:

>Translated_44_residues
MQRTLGGTNRKRKRTSGFRARMRTPDGRNVIRARRKRGRHRLSV
>Mature_44_residues
MQRTLGGTNRKRKRTSGFRARMRTPDGRNVIRARRKRGRHRLSV

Specific function: Unknown

COG id: COG0230

COG function: function code J; Ribosomal protein L34

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L34P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL34_ANAVT (Q3M7J7)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_323934.1
- ProteinModelPortal:   Q3M7J7
- SMR:   Q3M7J7
- STRING:   Q3M7J7
- GeneID:   3679900
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_3432
- eggNOG:   COG0230
- HOGENOM:   HBG729750
- ProtClustDB:   PRK00399
- BioCyc:   AVAR240292:AVA_3432-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00391
- InterPro:   IPR000271
- InterPro:   IPR020939
- ProDom:   PD003101
- TIGRFAMs:   TIGR01030

Pfam domain/function: PF00468 Ribosomal_L34

EC number: NA

Molecular weight: Translated: 5248; Mature: 5248

Theoretical pI: Translated: 13.28; Mature: 13.28

Prosite motif: PS00784 RIBOSOMAL_L34

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRTLGGTNRKRKRTSGFRARMRTPDGRNVIRARRKRGRHRLSV
CCCCCCCCCCCHHHCCCCHHCCCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQRTLGGTNRKRKRTSGFRARMRTPDGRNVIRARRKRGRHRLSV
CCCCCCCCCCCHHHCCCCHHCCCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA