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The map label for this gene is stc [H]

Identifier: 75909607

GI number: 75909607

Start: 4228410

End: 4229597

Strand: Direct

Name: stc [H]

Synonym: Ava_3401

Alternate gene names: 75909607

Gene position: 4228410-4229597 (Clockwise)

Preceding gene: 75909605

Following gene: 75909608

Centisome position: 66.42

GC content: 41.33

Gene sequence:

>1188_bases
ATGTTCATTTTAGAGAATGATCCACTAGAAGCAGGGCGTGTATATAAAAGTACAGGAGCGCTACCCAAGAATATATTACG
CTCAACAGTTTATCGAGCGTGGGAAAGATCCCATCTGCAAGGAGCTAATCCTCACTCGTTACAAGCGGAAAAACTTTCAA
GTTTGGAGACAGAACGTTTAGTAGAGCAGCAGAGTTATTTGCTCAATGTTGTGCGTCCTTATTTCCAAATTTTATCCCAG
GCAGCTGGTAAAGAACCTCATGCAGTTATGTTAGGCGATCGCCAAGCTATTTTGCTGGGTTTAACAGGTGATGAACAAAC
TATCAACTCAGAATCTTTTCCTGCTGCTGGTTCTTTATTATCTGAAAGTGTAGCTGGCGCTAATGGCATCGGTACACCCC
TAGCAGAAGAAGATTATGTAGAAATTATCGCCAGCGAGCATTTTATTGAAGGCTTCCATCCTTTTACCTGTCAGGGTATC
CCTTTGCGTAATGAAAAACAGGAAATTGTCGGAGTATTGAGTATCTCCTCACAACGTCAGGATGCAGGACAACGACTCAA
AGAAATTTTATTGTGTGCGTCTCGTGCTGTCGAGGCAGAATTCCTAATAGCAAACCTAAAAAAAGATATTCATCATGTAC
TAACCTCTAATCCTGAGGAATATCAACCATTAGAAGAATTGCGTCAAGATATTATCCAAGCACATCATGCTGCACGCTTA
AAATTGGAAGTTAGCTCTCGGATGGTGGCGGTGAATCGTCTAGATTATGCCAAACATCTGCTGCAACAAGCAGAAAAATC
GATTCGGATATTTCAACGCCATGCCGCAATTTGGCGTAGTTTAGCTTCTAGTGATGTTGGTTCAGTGGAAACTATCTCCT
TAACTGACACCATCCAAGATTTTGTGGAGTTATTATCCACAGAAGCTAACATCCGCAAGATAGAGGTTGTGACGAACTGG
CAAGAGCCAATTATAGTTATTACCGAACCAGCAACTCTGTTACGCCGTTTGTTACGTTATTTTTTGCAATCTTTCGAGAA
AGCAGGTAAAGGGGGAACACTAGAGGTGGCTGCTCAGAGGGCGGCAAATTCCCAAGTTGTCCTAGTGAGTTTTCTGCCTA
TTGCAACCTTAAATACATATCCATTAGAACCAACTCCATTAATTTTTTCCATACCAATAAAAAATTAA

Upstream 100 bases:

>100_bases
GTTACTTTATTTAATAAACTTTTTAGATCAGTAATATTTTATTTGTCAACTATAAAATAAAACGAGATTAACATAGGAAT
GCTCTAAAAATTTCAAAATC

Downstream 100 bases:

>100_bases
CAATTTATGAACAATCAAAGTTTAGCAAGAGGCAAAGTTTTAATAGCTGATGACGATGAAGATAGCCGAATGATGCTCTC
TTTTGTATTACAGGAAGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MFILENDPLEAGRVYKSTGALPKNILRSTVYRAWERSHLQGANPHSLQAEKLSSLETERLVEQQSYLLNVVRPYFQILSQ
AAGKEPHAVMLGDRQAILLGLTGDEQTINSESFPAAGSLLSESVAGANGIGTPLAEEDYVEIIASEHFIEGFHPFTCQGI
PLRNEKQEIVGVLSISSQRQDAGQRLKEILLCASRAVEAEFLIANLKKDIHHVLTSNPEEYQPLEELRQDIIQAHHAARL
KLEVSSRMVAVNRLDYAKHLLQQAEKSIRIFQRHAAIWRSLASSDVGSVETISLTDTIQDFVELLSTEANIRKIEVVTNW
QEPIIVITEPATLLRRLLRYFLQSFEKAGKGGTLEVAAQRAANSQVVLVSFLPIATLNTYPLEPTPLIFSIPIKN

Sequences:

>Translated_395_residues
MFILENDPLEAGRVYKSTGALPKNILRSTVYRAWERSHLQGANPHSLQAEKLSSLETERLVEQQSYLLNVVRPYFQILSQ
AAGKEPHAVMLGDRQAILLGLTGDEQTINSESFPAAGSLLSESVAGANGIGTPLAEEDYVEIIASEHFIEGFHPFTCQGI
PLRNEKQEIVGVLSISSQRQDAGQRLKEILLCASRAVEAEFLIANLKKDIHHVLTSNPEEYQPLEELRQDIIQAHHAARL
KLEVSSRMVAVNRLDYAKHLLQQAEKSIRIFQRHAAIWRSLASSDVGSVETISLTDTIQDFVELLSTEANIRKIEVVTNW
QEPIIVITEPATLLRRLLRYFLQSFEKAGKGGTLEVAAQRAANSQVVLVSFLPIATLNTYPLEPTPLIFSIPIKN
>Mature_395_residues
MFILENDPLEAGRVYKSTGALPKNILRSTVYRAWERSHLQGANPHSLQAEKLSSLETERLVEQQSYLLNVVRPYFQILSQ
AAGKEPHAVMLGDRQAILLGLTGDEQTINSESFPAAGSLLSESVAGANGIGTPLAEEDYVEIIASEHFIEGFHPFTCQGI
PLRNEKQEIVGVLSISSQRQDAGQRLKEILLCASRAVEAEFLIANLKKDIHHVLTSNPEEYQPLEELRQDIIQAHHAARL
KLEVSSRMVAVNRLDYAKHLLQQAEKSIRIFQRHAAIWRSLASSDVGSVETISLTDTIQDFVELLSTEANIRKIEVVTNW
QEPIIVITEPATLLRRLLRYFLQSFEKAGKGGTLEVAAQRAANSQVVLVSFLPIATLNTYPLEPTPLIFSIPIKN

Specific function: Unknown

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 43984; Mature: 43984

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFILENDPLEAGRVYKSTGALPKNILRSTVYRAWERSHLQGANPHSLQAEKLSSLETERL
CEEECCCCCCCCCEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
VEQQSYLLNVVRPYFQILSQAAGKEPHAVMLGDRQAILLGLTGDEQTINSESFPAAGSLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCHHHHH
SESVAGANGIGTPLAEEDYVEIIASEHFIEGFHPFTCQGIPLRNEKQEIVGVLSISSQRQ
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHH
DAGQRLKEILLCASRAVEAEFLIANLKKDIHHVLTSNPEEYQPLEELRQDIIQAHHAARL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEE
KLEVSSRMVAVNRLDYAKHLLQQAEKSIRIFQRHAAIWRSLASSDVGSVETISLTDTIQD
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH
FVELLSTEANIRKIEVVTNWQEPIIVITEPATLLRRLLRYFLQSFEKAGKGGTLEVAAQR
HHHHHCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHH
AANSQVVLVSFLPIATLNTYPLEPTPLIFSIPIKN
CCCCCEEEEEECCHHHCCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MFILENDPLEAGRVYKSTGALPKNILRSTVYRAWERSHLQGANPHSLQAEKLSSLETERL
CEEECCCCCCCCCEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
VEQQSYLLNVVRPYFQILSQAAGKEPHAVMLGDRQAILLGLTGDEQTINSESFPAAGSLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCHHHHH
SESVAGANGIGTPLAEEDYVEIIASEHFIEGFHPFTCQGIPLRNEKQEIVGVLSISSQRQ
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHH
DAGQRLKEILLCASRAVEAEFLIANLKKDIHHVLTSNPEEYQPLEELRQDIIQAHHAARL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEE
KLEVSSRMVAVNRLDYAKHLLQQAEKSIRIFQRHAAIWRSLASSDVGSVETISLTDTIQD
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH
FVELLSTEANIRKIEVVTNWQEPIIVITEPATLLRRLLRYFLQSFEKAGKGGTLEVAAQR
HHHHHCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHH
AANSQVVLVSFLPIATLNTYPLEPTPLIFSIPIKN
CCCCCEEEEEECCHHHCCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA