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The map label for this gene is 75909411

Identifier: 75909411

GI number: 75909411

Start: 3983240

End: 3983779

Strand: Direct

Name: 75909411

Synonym: Ava_3204

Alternate gene names: NA

Gene position: 3983240-3983779 (Clockwise)

Preceding gene: 75909410

Following gene: 75909412

Centisome position: 62.57

GC content: 43.33

Gene sequence:

>540_bases
GTGCAAATTCATTCTCATGCAGAATTTGATCCTAGTTCAAATCAACCAACTGAACAGGGTTTACAAAGAGTTCTCCAGCG
TCTTGTCCAGACAATGCAGAGAGACGCATTAGTTAGACAAACGACAAATAGACTCAGAGAATCCCTGCAAATTGATCGTG
TTGTTTTGTATTACTTTTACTGGCAGTGGCACGGACAAGTGACATTCGAGGCTTTAAGTTCTGAAGAATTTTCGATATTA
GGCTCAACCGGGGCAGATGAATGTTTTAATGATGAGTATGCAGAACTGTATTTAGCTGGACGGACAAAAGCGATCGCCGA
CATTGAATCAGCATCAATTACCCCTTGTCATAGGGATTTTCTCCGCACTCTACAAGTCCGCGCTAACCTAGTTGTACCAG
TTTTAGTCCCCAAGGGGTTATGGGGCTTGCTAGTCGCACATCACTGCCAAGGAACGCGTTTTTGGACAGAATCAGATATA
GAACTTATGCAGACAGGAGCGAAAACCCTCGCAACATCGCCTTATATTTTGGAAAGTTGA

Upstream 100 bases:

>100_bases
TATATAAATGAGTTAGCGATATTACGACCACTGTTCAATTGAAACCAAATAAATTACTATATAAATCTGAAAGACTTGAC
TGATTCATCATTGTAGAATT

Downstream 100 bases:

>100_bases
ATTACAAAATTTCCTACTCCCGGCTTTAATTTAACTTGTCTATGAATTCTCATTCAGCGCTACAAACAGCCATCACCCAT
CGCATTGCTAACAGCCCCGA

Product: sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MQIHSHAEFDPSSNQPTEQGLQRVLQRLVQTMQRDALVRQTTNRLRESLQIDRVVLYYFYWQWHGQVTFEALSSEEFSIL
GSTGADECFNDEYAELYLAGRTKAIADIESASITPCHRDFLRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTRFWTESDI
ELMQTGAKTLATSPYILES

Sequences:

>Translated_179_residues
MQIHSHAEFDPSSNQPTEQGLQRVLQRLVQTMQRDALVRQTTNRLRESLQIDRVVLYYFYWQWHGQVTFEALSSEEFSIL
GSTGADECFNDEYAELYLAGRTKAIADIESASITPCHRDFLRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTRFWTESDI
ELMQTGAKTLATSPYILES
>Mature_179_residues
MQIHSHAEFDPSSNQPTEQGLQRVLQRLVQTMQRDALVRQTTNRLRESLQIDRVVLYYFYWQWHGQVTFEALSSEEFSIL
GSTGADECFNDEYAELYLAGRTKAIADIESASITPCHRDFLRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTRFWTESDI
ELMQTGAKTLATSPYILES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR016132 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 20445; Mature: 20445

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIHSHAEFDPSSNQPTEQGLQRVLQRLVQTMQRDALVRQTTNRLRESLQIDRVVLYYFY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
WQWHGQVTFEALSSEEFSILGSTGADECFNDEYAELYLAGRTKAIADIESASITPCHRDF
EEECCEEEEEECCCCCEEEEECCCCCHHCCCHHHHEEECCCCHHHHHCCCCCCCHHHHHH
LRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTRFWTESDIELMQTGAKTLATSPYILES
HHHHHHHHCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHCCCCEEECC
>Mature Secondary Structure
MQIHSHAEFDPSSNQPTEQGLQRVLQRLVQTMQRDALVRQTTNRLRESLQIDRVVLYYFY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
WQWHGQVTFEALSSEEFSILGSTGADECFNDEYAELYLAGRTKAIADIESASITPCHRDF
EEECCEEEEEECCCCCEEEEECCCCCHHCCCHHHHEEECCCCHHHHHCCCCCCCHHHHHH
LRTLQVRANLVVPVLVPKGLWGLLVAHHCQGTRFWTESDIELMQTGAKTLATSPYILES
HHHHHHHHCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1554697 [H]