Click here to switch to the map view.

The map label for this gene is chlD [H]

Identifier: 75909292

GI number: 75909292

Start: 3831583

End: 3833619

Strand: Direct

Name: chlD [H]

Synonym: Ava_3084

Alternate gene names: 75909292

Gene position: 3831583-3833619 (Clockwise)

Preceding gene: 75909288

Following gene: 75909294

Centisome position: 60.19

GC content: 48.5

Gene sequence:

>2037_bases
ATGCCTGCGCCTACTATTAATCCCACAATTACTGCTTTTCCCTTGACAGCCGTAGTCGGTCAAGAAGCCATCAAATTAGC
GTTGCTGTTAGCAGCAGTCGATCCTGGTTTGGGGGGAGTAGCGATCGCAGGTCGTCGTGGTACGGCAAAATCTGTAATGG
CTCGTGCTATCCACGCCCTACTCCCACCCATTGAAGTTGTTAAAGGCTCATTGAGCAATTGCGATCCCAACCACCCAGAA
GAATGGGATGATTATCTATTGGCGGAGTACGCTGACAAAAATCTTCAAGATGTCCCCACGGAAATTATTCCCTCGCCTTT
TGTGCAGATTCCCCTTGGCGTGACAGAAGACCGCCTCCTGGGTTCTGTGGATGTGGAACAGTCGGTGAAGCAAGGAGACA
CCATATTTCAGCCAGGGTTACTCGCCACAGCTAACCGGGGTGTGCTGTATGTGGATGAAATCAATTTATTAGATGACCAA
ATATCAAATCAGCTATTAACAGTCCTCTCGGAAGGTCGTAACCAAATTGAGCGTGAGGGGATTAGTTTTCAGCATCCTTG
CAAATCTCTGTTTATCGCCACCTACAACCCAGAAGAAGGCGCATTACGGGAACATTTACTAGATAGAATTGCGATCGCTC
TTTCGGCTGACGGTGTTCTCGGTCTAGATCAAAGAGTAACAGCTGTTGAGCAGGCGATCGCCTATTCCAAATCCCCCCAA
GATTTCCTCCAGCAATACAACGAAGATTTAGACTCACTCAAAACCCAAATCATCTTGGCGCGGGAATGGTTGAAGGAAGT
CACAATCACTCAAGAACAAATAGCCTACTTAGTAGACGAAGCCATTCGCGGCGTTGTCCAAGGTCATCGTGCCGAGTTAT
TTGCCGTACGGGTTGCCAAAGCGGCGGCGGCTTTAGAAGGGCGGACAACCGTCAACGCTGAAGATTTGCGGCGGGCTGTG
GAGTTGGTAATTGTACCACGGGCAACAGTTATCCAGACACCACCACCAGACCAGCCACCGCCACCACCCCCGCCACCACC
ACCACAAAGCCAGGACGAGTCAGAGGAAGAACAAGAAGAAGAACAGGAAAACAACGAAGATAAACCAGAGGAACAAGAAC
AGCCAGAACCCCCTGATATTCCCGAAGAATTTATCTTCGACCCAGAAGGGGTAATTTTAGATAACAGTGTTCTGTATTTT
GCTCAGATGGCACAACGCCAAGGTAAATCTGGTAGTCGGAGTATCATCTTTTCCGACGACCGGGGGCGCTATATTAAGCC
TATGTTGCCTAAGGGGAAAGTGCGACGTATTGCAGTAGATGCCACTCTCAGGGCAGCTGCACCCTATCAAAAAGCACGAC
GAGAAAGACAGCCTGATAAAAAAGTTATTGTTGAGCAAGGTGACATTCGCTCAAAACGCTTGGTACGCAAAGCTGGGGCG
TTGGTTGTTTTTGTGGTAGATGCTTCTGGCTCAATGGCCTTAAATCGGATGCAGTCAGCTAAAGGCGCAGTGATGCAACT
ACTCACCGAAGCTTATCAAAACCGTGACCAAGTAGCTTTGATTCCCTTCCGGGGAGAACAAGCAGAGGTATTACTACCAC
CAACTCGTTCTATTGCCTTAGCACGGAACCGACTGGAAAGATTACCCTGTGGTGGTGGTTCGCCCCTAGCTCATGGTTTA
ACCCAAGCTGTACGCGTCGGTGTCAATGCCCAAATGGGTGGAGATGTTGGACAAGTTGTCATTGTAGCTATCACCGACGG
CCGGGGTAATATTCCCCTATCACGTTCTTTGGGTGAACCACAAGAATCAGGAGAAAAACCAGATATCAAAGCGGAACTAT
TAGACATCGCCGCGAGAATCCGGGCTTTGGGGATGCAGTTACTCGTTATCGATACCGAAAGTAAATTTGTCTCTACCGGC
TTTGCTAAGGAATTAGCGAAAACCTCAGGAGGTAAATATTATCATCTACCTAAAGCCACCGATAAAGCCATTGCTGCTAT
GACTAAAGGAGCGATCGCTGATTTAAAATCTCGGTAG

Upstream 100 bases:

>100_bases
TCTCTCCAGGGTAATACAAAGCCTTTATCCTCATAACCCTTATTCTAAATGTGCCAGAAATTGATATGCTAAAAGCCGAG
ACTAGCTATTTTGCAAACCA

Downstream 100 bases:

>100_bases
ATAGTCACTGGTCAATGGTGGTCATTAGTCATTGGTAAATACACTATGGACTATGGACTATGGACTTTTGACTATTGACT
ATGAACCAGTAGGCATTACT

Product: protoporphyrin IX magnesium-chelatase

Products: NA

Alternate protein names: Mg-chelatase subunit D; Mg-protoporphyrin IX chelatase [H]

Number of amino acids: Translated: 678; Mature: 677

Protein sequence:

>678_residues
MPAPTINPTITAFPLTAVVGQEAIKLALLLAAVDPGLGGVAIAGRRGTAKSVMARAIHALLPPIEVVKGSLSNCDPNHPE
EWDDYLLAEYADKNLQDVPTEIIPSPFVQIPLGVTEDRLLGSVDVEQSVKQGDTIFQPGLLATANRGVLYVDEINLLDDQ
ISNQLLTVLSEGRNQIEREGISFQHPCKSLFIATYNPEEGALREHLLDRIAIALSADGVLGLDQRVTAVEQAIAYSKSPQ
DFLQQYNEDLDSLKTQIILAREWLKEVTITQEQIAYLVDEAIRGVVQGHRAELFAVRVAKAAAALEGRTTVNAEDLRRAV
ELVIVPRATVIQTPPPDQPPPPPPPPPPQSQDESEEEQEEEQENNEDKPEEQEQPEPPDIPEEFIFDPEGVILDNSVLYF
AQMAQRQGKSGSRSIIFSDDRGRYIKPMLPKGKVRRIAVDATLRAAAPYQKARRERQPDKKVIVEQGDIRSKRLVRKAGA
LVVFVVDASGSMALNRMQSAKGAVMQLLTEAYQNRDQVALIPFRGEQAEVLLPPTRSIALARNRLERLPCGGGSPLAHGL
TQAVRVGVNAQMGGDVGQVVIVAITDGRGNIPLSRSLGEPQESGEKPDIKAELLDIAARIRALGMQLLVIDTESKFVSTG
FAKELAKTSGGKYYHLPKATDKAIAAMTKGAIADLKSR

Sequences:

>Translated_678_residues
MPAPTINPTITAFPLTAVVGQEAIKLALLLAAVDPGLGGVAIAGRRGTAKSVMARAIHALLPPIEVVKGSLSNCDPNHPE
EWDDYLLAEYADKNLQDVPTEIIPSPFVQIPLGVTEDRLLGSVDVEQSVKQGDTIFQPGLLATANRGVLYVDEINLLDDQ
ISNQLLTVLSEGRNQIEREGISFQHPCKSLFIATYNPEEGALREHLLDRIAIALSADGVLGLDQRVTAVEQAIAYSKSPQ
DFLQQYNEDLDSLKTQIILAREWLKEVTITQEQIAYLVDEAIRGVVQGHRAELFAVRVAKAAAALEGRTTVNAEDLRRAV
ELVIVPRATVIQTPPPDQPPPPPPPPPPQSQDESEEEQEEEQENNEDKPEEQEQPEPPDIPEEFIFDPEGVILDNSVLYF
AQMAQRQGKSGSRSIIFSDDRGRYIKPMLPKGKVRRIAVDATLRAAAPYQKARRERQPDKKVIVEQGDIRSKRLVRKAGA
LVVFVVDASGSMALNRMQSAKGAVMQLLTEAYQNRDQVALIPFRGEQAEVLLPPTRSIALARNRLERLPCGGGSPLAHGL
TQAVRVGVNAQMGGDVGQVVIVAITDGRGNIPLSRSLGEPQESGEKPDIKAELLDIAARIRALGMQLLVIDTESKFVSTG
FAKELAKTSGGKYYHLPKATDKAIAAMTKGAIADLKSR
>Mature_677_residues
PAPTINPTITAFPLTAVVGQEAIKLALLLAAVDPGLGGVAIAGRRGTAKSVMARAIHALLPPIEVVKGSLSNCDPNHPEE
WDDYLLAEYADKNLQDVPTEIIPSPFVQIPLGVTEDRLLGSVDVEQSVKQGDTIFQPGLLATANRGVLYVDEINLLDDQI
SNQLLTVLSEGRNQIEREGISFQHPCKSLFIATYNPEEGALREHLLDRIAIALSADGVLGLDQRVTAVEQAIAYSKSPQD
FLQQYNEDLDSLKTQIILAREWLKEVTITQEQIAYLVDEAIRGVVQGHRAELFAVRVAKAAAALEGRTTVNAEDLRRAVE
LVIVPRATVIQTPPPDQPPPPPPPPPPQSQDESEEEQEEEQENNEDKPEEQEQPEPPDIPEEFIFDPEGVILDNSVLYFA
QMAQRQGKSGSRSIIFSDDRGRYIKPMLPKGKVRRIAVDATLRAAAPYQKARRERQPDKKVIVEQGDIRSKRLVRKAGAL
VVFVVDASGSMALNRMQSAKGAVMQLLTEAYQNRDQVALIPFRGEQAEVLLPPTRSIALARNRLERLPCGGGSPLAHGLT
QAVRVGVNAQMGGDVGQVVIVAITDGRGNIPLSRSLGEPQESGEKPDIKAELLDIAARIRALGMQLLVIDTESKFVSTGF
AKELAKTSGGKYYHLPKATDKAIAAMTKGAIADLKSR

Specific function: Involved in chlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX [H]

COG id: COG1240

COG function: function code H; Mg-chelatase subunit ChlD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 VWFA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011776
- InterPro:   IPR000523
- InterPro:   IPR002035 [H]

Pfam domain/function: PF01078 Mg_chelatase; PF00092 VWA [H]

EC number: =6.6.1.1 [H]

Molecular weight: Translated: 73818; Mature: 73687

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPTINPTITAFPLTAVVGQEAIKLALLLAAVDPGLGGVAIAGRRGTAKSVMARAIHAL
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
LPPIEVVKGSLSNCDPNHPEEWDDYLLAEYADKNLQDVPTEIIPSPFVQIPLGVTEDRLL
CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCHHHCCCCCEEECCCCCHHHHC
GSVDVEQSVKQGDTIFQPGLLATANRGVLYVDEINLLDDQISNQLLTVLSEGRNQIEREG
CCCCHHHHHHCCCCEECCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
ISFQHPCKSLFIATYNPEEGALREHLLDRIAIALSADGVLGLDQRVTAVEQAIAYSKSPQ
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHH
DFLQQYNEDLDSLKTQIILAREWLKEVTITQEQIAYLVDEAIRGVVQGHRAELFAVRVAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AAAALEGRTTVNAEDLRRAVELVIVPRATVIQTPPPDQPPPPPPPPPPQSQDESEEEQEE
HHHHHCCCCCCCHHHHHHHHHEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
EQENNEDKPEEQEQPEPPDIPEEFIFDPEGVILDNSVLYFAQMAQRQGKSGSRSIIFSDD
HHHCCCCCCCHHCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCCEEEEECC
RGRYIKPMLPKGKVRRIAVDATLRAAAPYQKARRERQPDKKVIVEQGDIRSKRLVRKAGA
CCCEECCCCCCCCEEEEEECHHHHHCCCHHHHHHHCCCCHHEEEECCCCHHHHHHHHCCC
LVVFVVDASGSMALNRMQSAKGAVMQLLTEAYQNRDQVALIPFRGEQAEVLLPPTRSIAL
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEECCCHHHHH
ARNRLERLPCGGGSPLAHGLTQAVRVGVNAQMGGDVGQVVIVAITDGRGNIPLSRSLGEP
HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
QESGEKPDIKAELLDIAARIRALGMQLLVIDTESKFVSTGFAKELAKTSGGKYYHLPKAT
HHCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCH
DKAIAAMTKGAIADLKSR
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PAPTINPTITAFPLTAVVGQEAIKLALLLAAVDPGLGGVAIAGRRGTAKSVMARAIHAL
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
LPPIEVVKGSLSNCDPNHPEEWDDYLLAEYADKNLQDVPTEIIPSPFVQIPLGVTEDRLL
CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCHHHCCCCCEEECCCCCHHHHC
GSVDVEQSVKQGDTIFQPGLLATANRGVLYVDEINLLDDQISNQLLTVLSEGRNQIEREG
CCCCHHHHHHCCCCEECCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
ISFQHPCKSLFIATYNPEEGALREHLLDRIAIALSADGVLGLDQRVTAVEQAIAYSKSPQ
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHH
DFLQQYNEDLDSLKTQIILAREWLKEVTITQEQIAYLVDEAIRGVVQGHRAELFAVRVAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AAAALEGRTTVNAEDLRRAVELVIVPRATVIQTPPPDQPPPPPPPPPPQSQDESEEEQEE
HHHHHCCCCCCCHHHHHHHHHEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
EQENNEDKPEEQEQPEPPDIPEEFIFDPEGVILDNSVLYFAQMAQRQGKSGSRSIIFSDD
HHHCCCCCCCHHCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCCEEEEECC
RGRYIKPMLPKGKVRRIAVDATLRAAAPYQKARRERQPDKKVIVEQGDIRSKRLVRKAGA
CCCEECCCCCCCCEEEEEECHHHHHCCCHHHHHHHCCCCHHEEEECCCCHHHHHHHHCCC
LVVFVVDASGSMALNRMQSAKGAVMQLLTEAYQNRDQVALIPFRGEQAEVLLPPTRSIAL
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEECCCHHHHH
ARNRLERLPCGGGSPLAHGLTQAVRVGVNAQMGGDVGQVVIVAITDGRGNIPLSRSLGEP
HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
QESGEKPDIKAELLDIAARIRALGMQLLVIDTESKFVSTGFAKELAKTSGGKYYHLPKAT
HHCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCH
DKAIAAMTKGAIADLKSR
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8663186; 8905231 [H]