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The map label for this gene is yfmR [H]

Identifier: 75909229

GI number: 75909229

Start: 3742895

End: 3744835

Strand: Direct

Name: yfmR [H]

Synonym: Ava_3020

Alternate gene names: 75909229

Gene position: 3742895-3744835 (Clockwise)

Preceding gene: 75909228

Following gene: 75909230

Centisome position: 58.8

GC content: 41.68

Gene sequence:

>1941_bases
ATGAGCGTCATCACATTACAATCAGTTAAAAAAGACTTTGGAATCAAAGAAATTTTAAAAGATGCTAGCTTTAGTTTAGA
TGCTACTGATAAAGTTGGCTTAATAGGTACAAACGGTTCCGGCAAATCCACTTTATTAAAAATGATCGCCGGCATAGAAT
CTATTGATAGTGGACAAATTCTTTGTACTTCTGGTTCTAAAATCATCTACTTACCCCAACAGCCAGACTTAGATGAAAAC
CTTACTGTTTTAGAACAAATTTTTGCCGACAGTGGCGAACAAATGACCTTAGTACGTGAGTATGAAGAACTTTCTGATAA
ACTAGCTCACTACCCAGAAGATAGCCAAATCATGTCCCGTCTTTCTGTTGTCATGCAGCGCATGGACGCAACTAACGCCT
GGGAGTTAGAAACCAATGCCAAAATTATCCTCAGCAAACTAGGAATTACTGATTTTGATGCGCCCATTGGCAGTTTATCT
GGCGGCTATCGTAAGCGTATAGCTTTAGCAACAGCCTTACTTGCAGAACCAGATGTTTTACTGATGGATGAGCCAACAAA
CCATCTGGATGCTTTGTCTGTAGAATGGTTACAAAGCTATCTTAACCGCTTTCGTGGGGCATTATTCCTGATTACACACG
ATCGCTACTTTTTAGATAAAGTTACCAACCGCATCATCGAAATCGACCGAGGCGATGTTTACAGCTATGCAGGTAATTAC
TCATACTACCTGGAAAAGAAAGCTCTGGCGGAAGAATCAGCCATTAGTACCCAACGCAAACATCAAGGTGTATTGCGGCG
AGAACTAGAATGGCTCAAGCGCGGCCCCAAAGCCAGAAGTACCAAACAAAAAGCCCGCATTCAACGCGTCCAAGCCATGC
GCGAAACTGAGTTTAAACAAACTCAAGGTAAAGTGGATATCTCCACAGTTAGCCGTCGCATTGGCAAAAAAGTGATTGAT
TTGCATAACATTTCTAAAGCCTATAATGACCGCATCTTAATCAAAGATTTTACCTACGAATTTAGCCCGGAAGACCGCAT
CGGCATTATCGGCGGTAACGGTGCTGGCAAGTCTACCTTAATGAATATCATCACCGGGCGTATAGAACCCGATGCCGGTA
AAGTAGAAATTGGTTCTACCATCCACATTGGTTATTTTGACCAACATTCTGAAGAATTACTCACAGCTGTAGATGAAAAT
CAGCGCGTGATTGACTACATTAAAGAAGAGGGAGAATTTGTTCAGATAGCCGATGGGACAAAAATTACTGCTTCCCAAAT
GTTAGAACGCTTTCTCTTTCCAGGGAATCAGCAGTATGCACCAATTCATAAACTATCTGGTGGTGAAAAACGCCGATTAT
TTCTCCTGCGTATCCTCATCAGCGCCCCCAATGTCTTAATTTTAGATGAACCGACAAACGATTTAGATGTGCAAACACTA
GCAGTCTTAGAAGACTACTTGGAAGATTTTAGCGGTAGCGTGATTGTAGTTTCCCACGATCGCTACTTTTTAGACCGTAC
TGTTGATACAATATTTGCCTTGGAAGAAGGTGGAAACCTGCGGCAATATCCAGGTAATTATTCAGTTTATCTAGACTACA
AAAAAGCCGAGGAAGCACAACAAGCAACACTCAACACTAAAGAAAAGACAAAAAATTCCCCAGAAACAAAAGTTACATCG
CAAACTAAAGATGTAGAAACTAAAAAACGGCGTAGACTATCCAATTGGGAAAAGCGGGAATTTACCGAGTTAGAAGGCAA
AATTGCTCAACTAGAGGACGAAAAAACCCAAGCCGAGCAAGCACTAACTCATGTCCCTCCCGGCAATTATACCCAAGTAC
AAAAACTCTACGAACAAATAGAAGCGCTGAAGCAAGCAATTGATGTAGCGACTGAGCGCTGGTTAGAATTAGCGGAGATA
GAGTCTTCCGAGAGTGGGTAA

Upstream 100 bases:

>100_bases
AATCTGAGGTACGCTACACTCAATAAGCGTACCTCTTCCTCCTCAAATCTTCTGACCTTTGCGCCTGGGCGTGAGCTAAA
CAGTATCTTTTAAAATTGCT

Downstream 100 bases:

>100_bases
GCGCAACATGATAGCTCGAAAGCAGAATCTACCATCAAACCTGGCATTAAAGGATGCCCGAATTGCCAACACAAATCAAT
TCTTTAAAAACTCTGCCACT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 645

Protein sequence:

>646_residues
MSVITLQSVKKDFGIKEILKDASFSLDATDKVGLIGTNGSGKSTLLKMIAGIESIDSGQILCTSGSKIIYLPQQPDLDEN
LTVLEQIFADSGEQMTLVREYEELSDKLAHYPEDSQIMSRLSVVMQRMDATNAWELETNAKIILSKLGITDFDAPIGSLS
GGYRKRIALATALLAEPDVLLMDEPTNHLDALSVEWLQSYLNRFRGALFLITHDRYFLDKVTNRIIEIDRGDVYSYAGNY
SYYLEKKALAEESAISTQRKHQGVLRRELEWLKRGPKARSTKQKARIQRVQAMRETEFKQTQGKVDISTVSRRIGKKVID
LHNISKAYNDRILIKDFTYEFSPEDRIGIIGGNGAGKSTLMNIITGRIEPDAGKVEIGSTIHIGYFDQHSEELLTAVDEN
QRVIDYIKEEGEFVQIADGTKITASQMLERFLFPGNQQYAPIHKLSGGEKRRLFLLRILISAPNVLILDEPTNDLDVQTL
AVLEDYLEDFSGSVIVVSHDRYFLDRTVDTIFALEEGGNLRQYPGNYSVYLDYKKAEEAQQATLNTKEKTKNSPETKVTS
QTKDVETKKRRRLSNWEKREFTELEGKIAQLEDEKTQAEQALTHVPPGNYTQVQKLYEQIEALKQAIDVATERWLELAEI
ESSESG

Sequences:

>Translated_646_residues
MSVITLQSVKKDFGIKEILKDASFSLDATDKVGLIGTNGSGKSTLLKMIAGIESIDSGQILCTSGSKIIYLPQQPDLDEN
LTVLEQIFADSGEQMTLVREYEELSDKLAHYPEDSQIMSRLSVVMQRMDATNAWELETNAKIILSKLGITDFDAPIGSLS
GGYRKRIALATALLAEPDVLLMDEPTNHLDALSVEWLQSYLNRFRGALFLITHDRYFLDKVTNRIIEIDRGDVYSYAGNY
SYYLEKKALAEESAISTQRKHQGVLRRELEWLKRGPKARSTKQKARIQRVQAMRETEFKQTQGKVDISTVSRRIGKKVID
LHNISKAYNDRILIKDFTYEFSPEDRIGIIGGNGAGKSTLMNIITGRIEPDAGKVEIGSTIHIGYFDQHSEELLTAVDEN
QRVIDYIKEEGEFVQIADGTKITASQMLERFLFPGNQQYAPIHKLSGGEKRRLFLLRILISAPNVLILDEPTNDLDVQTL
AVLEDYLEDFSGSVIVVSHDRYFLDRTVDTIFALEEGGNLRQYPGNYSVYLDYKKAEEAQQATLNTKEKTKNSPETKVTS
QTKDVETKKRRRLSNWEKREFTELEGKIAQLEDEKTQAEQALTHVPPGNYTQVQKLYEQIEALKQAIDVATERWLELAEI
ESSESG
>Mature_645_residues
SVITLQSVKKDFGIKEILKDASFSLDATDKVGLIGTNGSGKSTLLKMIAGIESIDSGQILCTSGSKIIYLPQQPDLDENL
TVLEQIFADSGEQMTLVREYEELSDKLAHYPEDSQIMSRLSVVMQRMDATNAWELETNAKIILSKLGITDFDAPIGSLSG
GYRKRIALATALLAEPDVLLMDEPTNHLDALSVEWLQSYLNRFRGALFLITHDRYFLDKVTNRIIEIDRGDVYSYAGNYS
YYLEKKALAEESAISTQRKHQGVLRRELEWLKRGPKARSTKQKARIQRVQAMRETEFKQTQGKVDISTVSRRIGKKVIDL
HNISKAYNDRILIKDFTYEFSPEDRIGIIGGNGAGKSTLMNIITGRIEPDAGKVEIGSTIHIGYFDQHSEELLTAVDENQ
RVIDYIKEEGEFVQIADGTKITASQMLERFLFPGNQQYAPIHKLSGGEKRRLFLLRILISAPNVLILDEPTNDLDVQTLA
VLEDYLEDFSGSVIVVSHDRYFLDRTVDTIFALEEGGNLRQYPGNYSVYLDYKKAEEAQQATLNTKEKTKNSPETKVTSQ
TKDVETKKRRRLSNWEKREFTELEGKIAQLEDEKTQAEQALTHVPPGNYTQVQKLYEQIEALKQAIDVATERWLELAEIE
SSESG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=537, Percent_Identity=27.1880819366853, Blast_Score=211, Evalue=2e-54,
Organism=Homo sapiens, GI27881506, Length=555, Percent_Identity=30.0900900900901, Blast_Score=202, Evalue=8e-52,
Organism=Homo sapiens, GI10947137, Length=555, Percent_Identity=30.0900900900901, Blast_Score=202, Evalue=8e-52,
Organism=Homo sapiens, GI69354671, Length=545, Percent_Identity=30.0917431192661, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI10947135, Length=545, Percent_Identity=30.0917431192661, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI27477115, Length=199, Percent_Identity=29.1457286432161, Blast_Score=70, Evalue=5e-12,
Organism=Escherichia coli, GI2367384, Length=527, Percent_Identity=38.7096774193548, Blast_Score=364, Evalue=1e-101,
Organism=Escherichia coli, GI1787182, Length=646, Percent_Identity=32.3529411764706, Blast_Score=340, Evalue=2e-94,
Organism=Escherichia coli, GI1789751, Length=620, Percent_Identity=30.4838709677419, Blast_Score=275, Evalue=4e-75,
Organism=Escherichia coli, GI1787041, Length=540, Percent_Identity=28.8888888888889, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI87081782, Length=533, Percent_Identity=26.266416510319, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1786975, Length=492, Percent_Identity=24.7967479674797, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788165, Length=206, Percent_Identity=29.126213592233, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI48994943, Length=628, Percent_Identity=21.8152866242038, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1786872, Length=253, Percent_Identity=26.4822134387352, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1789891, Length=227, Percent_Identity=25.9911894273128, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI48994997, Length=231, Percent_Identity=23.3766233766234, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI48994883, Length=230, Percent_Identity=26.5217391304348, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786398, Length=241, Percent_Identity=26.1410788381743, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787547, Length=231, Percent_Identity=25.5411255411255, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=23.3183856502242, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=25.3393665158371, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=559, Percent_Identity=28.6225402504472, Blast_Score=228, Evalue=6e-60,
Organism=Caenorhabditis elegans, GI17555318, Length=537, Percent_Identity=29.0502793296089, Blast_Score=198, Evalue=7e-51,
Organism=Caenorhabditis elegans, GI17553372, Length=536, Percent_Identity=28.544776119403, Blast_Score=198, Evalue=9e-51,
Organism=Caenorhabditis elegans, GI212646699, Length=279, Percent_Identity=25.8064516129032, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=345, Percent_Identity=23.4782608695652, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=528, Percent_Identity=30.3030303030303, Blast_Score=219, Evalue=9e-58,
Organism=Saccharomyces cerevisiae, GI6321121, Length=553, Percent_Identity=29.4755877034358, Blast_Score=197, Evalue=6e-51,
Organism=Saccharomyces cerevisiae, GI6324314, Length=388, Percent_Identity=30.6701030927835, Blast_Score=140, Evalue=7e-34,
Organism=Saccharomyces cerevisiae, GI6323278, Length=387, Percent_Identity=28.9405684754522, Blast_Score=135, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6325030, Length=387, Percent_Identity=28.4237726098191, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6322980, Length=283, Percent_Identity=28.2685512367491, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24641342, Length=510, Percent_Identity=30.5882352941176, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI24642252, Length=550, Percent_Identity=30, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI18859989, Length=550, Percent_Identity=30, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI24666836, Length=515, Percent_Identity=30.2912621359223, Blast_Score=211, Evalue=2e-54,
Organism=Drosophila melanogaster, GI221500365, Length=260, Percent_Identity=26.9230769230769, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI116007184, Length=260, Percent_Identity=26.9230769230769, Blast_Score=83, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24641565, Length=244, Percent_Identity=25.4098360655738, Blast_Score=73, Evalue=7e-13,
Organism=Drosophila melanogaster, GI19920532, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580930, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 73035; Mature: 72903

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVITLQSVKKDFGIKEILKDASFSLDATDKVGLIGTNGSGKSTLLKMIAGIESIDSGQI
CCEEEHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCE
LCTSGSKIIYLPQQPDLDENLTVLEQIFADSGEQMTLVREYEELSDKLAHYPEDSQIMSR
EEECCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHH
LSVVMQRMDATNAWELETNAKIILSKLGITDFDAPIGSLSGGYRKRIALATALLAEPDVL
HHHHHHHHCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
LMDEPTNHLDALSVEWLQSYLNRFRGALFLITHDRYFLDKVTNRIIEIDRGDVYSYAGNY
EECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEECCCCCEEEECCCE
SYYLEKKALAEESAISTQRKHQGVLRRELEWLKRGPKARSTKQKARIQRVQAMRETEFKQ
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
TQGKVDISTVSRRIGKKVIDLHNISKAYNDRILIKDFTYEFSPEDRIGIIGGNGAGKSTL
HCCCEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEECCCCCCEEEEECCCCCHHHH
MNIITGRIEPDAGKVEIGSTIHIGYFDQHSEELLTAVDENQRVIDYIKEEGEFVQIADGT
HHHHHCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCC
KITASQMLERFLFPGNQQYAPIHKLSGGEKRRLFLLRILISAPNVLILDEPTNDLDVQTL
EEHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
AVLEDYLEDFSGSVIVVSHDRYFLDRTVDTIFALEEGGNLRQYPGNYSVYLDYKKAEEAQ
HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHEEECCCCCCCCCCCCEEEEEEEHHHHHHH
QATLNTKEKTKNSPETKVTSQTKDVETKKRRRLSNWEKREFTELEGKIAQLEDEKTQAEQ
HHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHCCHHHHHHH
ALTHVPPGNYTQVQKLYEQIEALKQAIDVATERWLELAEIESSESG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVITLQSVKKDFGIKEILKDASFSLDATDKVGLIGTNGSGKSTLLKMIAGIESIDSGQI
CEEEHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCE
LCTSGSKIIYLPQQPDLDENLTVLEQIFADSGEQMTLVREYEELSDKLAHYPEDSQIMSR
EEECCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHH
LSVVMQRMDATNAWELETNAKIILSKLGITDFDAPIGSLSGGYRKRIALATALLAEPDVL
HHHHHHHHCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
LMDEPTNHLDALSVEWLQSYLNRFRGALFLITHDRYFLDKVTNRIIEIDRGDVYSYAGNY
EECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEECCCCCEEEECCCE
SYYLEKKALAEESAISTQRKHQGVLRRELEWLKRGPKARSTKQKARIQRVQAMRETEFKQ
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
TQGKVDISTVSRRIGKKVIDLHNISKAYNDRILIKDFTYEFSPEDRIGIIGGNGAGKSTL
HCCCEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEECCCCCCEEEEECCCCCHHHH
MNIITGRIEPDAGKVEIGSTIHIGYFDQHSEELLTAVDENQRVIDYIKEEGEFVQIADGT
HHHHHCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCC
KITASQMLERFLFPGNQQYAPIHKLSGGEKRRLFLLRILISAPNVLILDEPTNDLDVQTL
EEHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
AVLEDYLEDFSGSVIVVSHDRYFLDRTVDTIFALEEGGNLRQYPGNYSVYLDYKKAEEAQ
HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHEEECCCCCCCCCCCCEEEEEEEHHHHHHH
QATLNTKEKTKNSPETKVTSQTKDVETKKRRRLSNWEKREFTELEGKIAQLEDEKTQAEQ
HHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHCCHHHHHHH
ALTHVPPGNYTQVQKLYEQIEALKQAIDVATERWLELAEIESSESG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]