Click here to switch to the map view.

The map label for this gene is cpcC [H]

Identifier: 75909142

GI number: 75909142

Start: 3637453

End: 3638313

Strand: Direct

Name: cpcC [H]

Synonym: Ava_2932

Alternate gene names: 75909142

Gene position: 3637453-3638313 (Clockwise)

Preceding gene: 75909141

Following gene: 75909143

Centisome position: 57.14

GC content: 46.23

Gene sequence:

>861_bases
ATGGCAATTACAGCAGCAGCATCTAGGCTGGGAACAGAGCCTTTTAGCGACGCACCTAAAGTAGAATTACGCCCCAAAGC
TAGCAGAGAAGAAGTAGAGTTAGTAATTCGCGCCGTCTATCGGCACGTTTTGGGCAATGATTACATACTGGCATCAGAGC
GCCTTGTAAGTGCAGAGTCTCTATTGAGAGATGGCAATCTGACAGTACGTGAATTTGTGCGTAGCGTTGCTAAATCAGAA
CTCTACAAAAAGAAATTTTTCTACAACAGCTTCCAAACTCGGCTAATCGAACTTAACTACAAACACCTGTTGGGTCGCGC
GCCTTATGATGAGTCAGAAGTTGTTTACCACTTGGACTTGTACCAAAACAAAGGTTACGATGCCGAAATAGACTCCTACA
TAGATTCATGGGAGTATCAAAGCAACTTCGGTGATAACGTCGTTCCTTACTACCGTGGTTTTGAGACTCAAGTAGGACAG
AAAACCGCAGGTTTTAACCGGATTTTCCGTTTATACCGTGGTTATGCTAACAGTGATCGCGCTCAAGTAGAAGGTACTAG
GTCTCGATTAGCGCAGGAATTAGCTAGCAACAAAGCTTCTACAATCGTGGGGCCATCTGGAAGTAATGATAGTTGGGGTT
TCCGGGCTTCAGCAGATGTAGCTCCCAAGAGAAACTTGGGTAATGCCGTAGGTGAAGGCGATCGCGTATATCGACTAGAA
GTTACCGGAATCCGTAGTCCTGGCTACCCCAGTGTACGACGGAGTAGCACGGTATTCATAGTACCTTACGAGCGACTCTC
TGACAAGATCCAGCAAGTTCACAAGCAAGGTGGCAAAATCGTTAGCGTCACCTCTGCGTAA

Upstream 100 bases:

>100_bases
GTAGTCATCACCTAGCAGTTGAATCTCGTTCCGGGCATAGTTTTATCTAGGAATAGCTGTCGGTAGTTATAATCGGCAAA
AACAATAGGGGAAACTTAAA

Downstream 100 bases:

>100_bases
GATAAGCGGATTTTGTCAGTGGTCGGTGGTCATTAGTTAGTAGTCAGGATTCAAACAACTGACAACTAGCAACTGACAAC
TAACACGCGACAGCGCTATA

Product: CpcD phycobilisome linker-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MAITAAASRLGTEPFSDAPKVELRPKASREEVELVIRAVYRHVLGNDYILASERLVSAESLLRDGNLTVREFVRSVAKSE
LYKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDLYQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQ
KTAGFNRIFRLYRGYANSDRAQVEGTRSRLAQELASNKASTIVGPSGSNDSWGFRASADVAPKRNLGNAVGEGDRVYRLE
VTGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA

Sequences:

>Translated_286_residues
MAITAAASRLGTEPFSDAPKVELRPKASREEVELVIRAVYRHVLGNDYILASERLVSAESLLRDGNLTVREFVRSVAKSE
LYKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDLYQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQ
KTAGFNRIFRLYRGYANSDRAQVEGTRSRLAQELASNKASTIVGPSGSNDSWGFRASADVAPKRNLGNAVGEGDRVYRLE
VTGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA
>Mature_285_residues
AITAAASRLGTEPFSDAPKVELRPKASREEVELVIRAVYRHVLGNDYILASERLVSAESLLRDGNLTVREFVRSVAKSEL
YKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDLYQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQK
TAGFNRIFRLYRGYANSDRAQVEGTRSRLAQELASNKASTIVGPSGSNDSWGFRASADVAPKRNLGNAVGEGDRVYRLEV
TGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 32219; Mature: 32088

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITAAASRLGTEPFSDAPKVELRPKASREEVELVIRAVYRHVLGNDYILASERLVSAES
CCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHH
LLRDGNLTVREFVRSVAKSELYKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHCCCCCCCCCEEEEEEE
YQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQKTAGFNRIFRLYRGYANSDR
ECCCCCCCHHHHHHHCCHHHCCCCCCCCHHHCCCCHHCCCHHHHHHHHHHHHHCCCCCCH
AQVEGTRSRLAQELASNKASTIVGPSGSNDSWGFRASADVAPKRNLGNAVGEGDRVYRLE
HHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEE
VTGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA
EEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCEEEEECC
>Mature Secondary Structure 
AITAAASRLGTEPFSDAPKVELRPKASREEVELVIRAVYRHVLGNDYILASERLVSAES
CCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHH
LLRDGNLTVREFVRSVAKSELYKKKFFYNSFQTRLIELNYKHLLGRAPYDESEVVYHLDL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHCCCCCCCCCEEEEEEE
YQNKGYDAEIDSYIDSWEYQSNFGDNVVPYYRGFETQVGQKTAGFNRIFRLYRGYANSDR
ECCCCCCCHHHHHHHCCHHHCCCCCCCCHHHCCCCHHCCCHHHHHHHHHHHHHCCCCCCH
AQVEGTRSRLAQELASNKASTIVGPSGSNDSWGFRASADVAPKRNLGNAVGEGDRVYRLE
HHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEE
VTGIRSPGYPSVRRSSTVFIVPYERLSDKIQQVHKQGGKIVSVTSA
EEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840; 1743523 [H]