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The map label for this gene is pecF [H]

Identifier: 75909139

GI number: 75909139

Start: 3635012

End: 3635653

Strand: Direct

Name: pecF [H]

Synonym: Ava_2929

Alternate gene names: 75909139

Gene position: 3635012-3635653 (Clockwise)

Preceding gene: 75909138

Following gene: 75909140

Centisome position: 57.1

GC content: 45.64

Gene sequence:

>642_bases
ATGAATCAAGCCTCATTTAGCGTACAAATCAATAGCAATGGAACCCCGGAAGAAGCGATGCCTACGGTAAGCTACGCTAA
TCCTACCATTCACTCTACGGCTGCCGATGCAACACGAGATGCCGCCGCTATTACCACCTTAATCGCAGCATTTCATCATC
ACCATCCTGCTGTTAGAAGTGCGGCTGTAGATGAATTAATCAAATTGGGAAGCATCACAGTGAATTTGTTAATTGCTGCT
TATGATGATTCTCAAGATCAAGGTTTTCAAGCCCAAATCATTCAAGTTTTAGCTCAAATTGGTGATGCAAAGGCGCTAAA
CTTATTAGCCGAGGTAGTGGGGACAAGTGTAGCTAATCACTGTCAAGGTAATGTCCGCCGCATTGCTGCAAGAGGGTTAG
GCAAAATCGCCAGCACCACCAGCAATCCAGAAATTATCAATAATGCCCAAGAAAAGTTAATCTGGGCATTACTTACCCCC
GAAGATTGGGGTCTACGTTATGCTGCTGCGGTCTCTTTACAAGAAATTGCCACGCCAAAAGCTAAAGCTGCTTTACAACA
AGCGATCGCCCAAGAAACTGATCCCGTTGTTCGCACACGTATGGCGATCGCTTTGAGTGAGGAAGCAAGGGAGAGGAACT
GA

Upstream 100 bases:

>100_bases
AACTTTAAAACTAATAACTGAATATTAAGGATTGGGGATTGGTCTGTTCTTACATCTCCAGTCCATTTTGTGCTGCATTG
TTTTATCCACAAAGAAATTT

Downstream 100 bases:

>100_bases
GAGATTTCCCCAATCCTTAGATCCCTGAAAATGTTGCGAAAGATTAATTTTACGTTTATTCACAAAAACCATCCTGTGGA
AAAAAATGGCGTAAAACAGC

Product: HEAT repeat-containing PBS lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MNQASFSVQINSNGTPEEAMPTVSYANPTIHSTAADATRDAAAITTLIAAFHHHHPAVRSAAVDELIKLGSITVNLLIAA
YDDSQDQGFQAQIIQVLAQIGDAKALNLLAEVVGTSVANHCQGNVRRIAARGLGKIASTTSNPEIINNAQEKLIWALLTP
EDWGLRYAAAVSLQEIATPKAKAALQQAIAQETDPVVRTRMAIALSEEARERN

Sequences:

>Translated_213_residues
MNQASFSVQINSNGTPEEAMPTVSYANPTIHSTAADATRDAAAITTLIAAFHHHHPAVRSAAVDELIKLGSITVNLLIAA
YDDSQDQGFQAQIIQVLAQIGDAKALNLLAEVVGTSVANHCQGNVRRIAARGLGKIASTTSNPEIINNAQEKLIWALLTP
EDWGLRYAAAVSLQEIATPKAKAALQQAIAQETDPVVRTRMAIALSEEARERN
>Mature_213_residues
MNQASFSVQINSNGTPEEAMPTVSYANPTIHSTAADATRDAAAITTLIAAFHHHHPAVRSAAVDELIKLGSITVNLLIAA
YDDSQDQGFQAQIIQVLAQIGDAKALNLLAEVVGTSVANHCQGNVRRIAARGLGKIASTTSNPEIINNAQEKLIWALLTP
EDWGLRYAAAVSLQEIATPKAKAALQQAIAQETDPVVRTRMAIALSEEARERN

Specific function: An enzyme involved in the biosynthesis of bilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: NA

Molecular weight: Translated: 22681; Mature: 22681

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQASFSVQINSNGTPEEAMPTVSYANPTIHSTAADATRDAAAITTLIAAFHHHHPAVRS
CCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAVDELIKLGSITVNLLIAAYDDSQDQGFQAQIIQVLAQIGDAKALNLLAEVVGTSVANH
HHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
CQGNVRRIAARGLGKIASTTSNPEIINNAQEKLIWALLTPEDWGLRYAAAVSLQEIATPK
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCH
AKAALQQAIAQETDPVVRTRMAIALSEEARERN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQASFSVQINSNGTPEEAMPTVSYANPTIHSTAADATRDAAAITTLIAAFHHHHPAVRS
CCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAVDELIKLGSITVNLLIAAYDDSQDQGFQAQIIQVLAQIGDAKALNLLAEVVGTSVANH
HHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
CQGNVRRIAARGLGKIASTTSNPEIINNAQEKLIWALLTPEDWGLRYAAAVSLQEIATPK
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCH
AKAALQQAIAQETDPVVRTRMAIALSEEARERN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1556083; 11759840 [H]