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The map label for this gene is ppiA [C]

Identifier: 75908533

GI number: 75908533

Start: 2877284

End: 2878390

Strand: Direct

Name: ppiA [C]

Synonym: Ava_2316

Alternate gene names: 75908533

Gene position: 2877284-2878390 (Clockwise)

Preceding gene: 75908529

Following gene: 75908534

Centisome position: 45.2

GC content: 42.37

Gene sequence:

>1107_bases
ATGTTGAATTTATTTAAATCCTGGCTGAAGAACAGCCTCATGGCAATACTGTTAGTAACAATATTTTTAGGCATAAATAC
AGCTGGCTGGACTCCTTCCAGTAACGCCGCCTTGCCATCTGGAAATGCGATTACTGACGGTAGAGCTTTATTGCGGTATG
CACTCCCAATAAATAATAAGCCGGTACGCGAACTGCAAGCCAGTTTAGAAGATATTTCTGCCCAACTGCGTGCAAATCGC
CGATGGGGTGCTGTCTCCAAAGACCTGAGTAAAGCATCCCGCATTCTTGATAAACCTTCACAAATCCTAACAAGCGTTCC
GGAAGAACGCCAAACTCAAGCTGAAACTTGGATTAATGAATTAAAAACTGGTGTAGCAAAAGTTCAAGAAATTGCACAAT
CCAAAGATAAAGAACAAGTTCTACTAGAGAGAGCTAAATTACTTAATTTAGTCTCTCTTATAGAAGAATCAATGGTGAAG
GAATTTCCTTTTGAAGTTCCAGAAGAGTATATTAACCTCCCTCAACTTAAAGGACGCGCCACCATAGCGATTAAAACCAA
CAAAGGTGATTTAACTGTTGTGGTTGATGGTTACAGCGCCCCTGTAACGGCGGGAAACTTTGTAGATTTAGTGCAACGGG
GTTTCTATAATGGGTTAGAATTTACCCGTTCTGAAGAATCTTACGTTCTACAAACCGGAGATCCCCCAGGCAAAGAACAG
GGTTTTATTGATCCCAAAACAGGCAAATATCGGGCTATCCCTCTAGAAATTCTGGTAGAAGGTGATAAAAAACCAACTTA
CGGGATCACCTTAGAAGACGCTGGACGCTATCTAGATATGCCAGTATTACCCTTTTCTTCCTTTGGTGCATTAGCAATGG
CTCGTCCTGAAACCGAAGCCGATGGTGCGTCTTCCCAAGTCTTCTTCTTCTTATTTGAACCAGAACTCACCCCAGCCGGA
CGTAACCTCTTAGATGGTCGTTACTCAGTTTTTGGCTATCTCATAGAAGGCAGAGACATTTTAGATACACTAAAAGCCGG
TGACAAAATCGAATCAGCAACCGTTGTTCAGGGACTAGACAATTTAGTACAACCCCAATCAGCCTAA

Upstream 100 bases:

>100_bases
TTAGTCCCCAATCCCCAAATACTACTCATGACTCGTACTGTGGGAAGATGATTGATGGGTTACGCCTAGTCAACAATTTG
ATGCTGCATTGAGCTATTCC

Downstream 100 bases:

>100_bases
TACCAGTTCTCTATGAAGTTGCGCCAAATAAATGATGTAGAGACGTTGCCTACAACGTCTCTACAGTACAGAATAAGGTT
CATCTTCATCAAGAAACGGT

Product: cyclophilin type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: Putative thylakoid lumen PPIase; Putative thylakoid lumen rotamase [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MLNLFKSWLKNSLMAILLVTIFLGINTAGWTPSSNAALPSGNAITDGRALLRYALPINNKPVRELQASLEDISAQLRANR
RWGAVSKDLSKASRILDKPSQILTSVPEERQTQAETWINELKTGVAKVQEIAQSKDKEQVLLERAKLLNLVSLIEESMVK
EFPFEVPEEYINLPQLKGRATIAIKTNKGDLTVVVDGYSAPVTAGNFVDLVQRGFYNGLEFTRSEESYVLQTGDPPGKEQ
GFIDPKTGKYRAIPLEILVEGDKKPTYGITLEDAGRYLDMPVLPFSSFGALAMARPETEADGASSQVFFFLFEPELTPAG
RNLLDGRYSVFGYLIEGRDILDTLKAGDKIESATVVQGLDNLVQPQSA

Sequences:

>Translated_368_residues
MLNLFKSWLKNSLMAILLVTIFLGINTAGWTPSSNAALPSGNAITDGRALLRYALPINNKPVRELQASLEDISAQLRANR
RWGAVSKDLSKASRILDKPSQILTSVPEERQTQAETWINELKTGVAKVQEIAQSKDKEQVLLERAKLLNLVSLIEESMVK
EFPFEVPEEYINLPQLKGRATIAIKTNKGDLTVVVDGYSAPVTAGNFVDLVQRGFYNGLEFTRSEESYVLQTGDPPGKEQ
GFIDPKTGKYRAIPLEILVEGDKKPTYGITLEDAGRYLDMPVLPFSSFGALAMARPETEADGASSQVFFFLFEPELTPAG
RNLLDGRYSVFGYLIEGRDILDTLKAGDKIESATVVQGLDNLVQPQSA
>Mature_368_residues
MLNLFKSWLKNSLMAILLVTIFLGINTAGWTPSSNAALPSGNAITDGRALLRYALPINNKPVRELQASLEDISAQLRANR
RWGAVSKDLSKASRILDKPSQILTSVPEERQTQAETWINELKTGVAKVQEIAQSKDKEQVLLERAKLLNLVSLIEESMVK
EFPFEVPEEYINLPQLKGRATIAIKTNKGDLTVVVDGYSAPVTAGNFVDLVQRGFYNGLEFTRSEESYVLQTGDPPGKEQ
GFIDPKTGKYRAIPLEILVEGDKKPTYGITLEDAGRYLDMPVLPFSSFGALAMARPETEADGASSQVFFFLFEPELTPAG
RNLLDGRYSVFGYLIEGRDILDTLKAGDKIESATVVQGLDNLVQPQSA

Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Required for the assembly and stabilization of PSII [H]

COG id: COG0652

COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family

Gene ontology:

Cell location: Cellular thylakoid lumen (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase cyclophilin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015891
- InterPro:   IPR002130
- InterPro:   IPR023222 [H]

Pfam domain/function: PF00160 Pro_isomerase [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 40499; Mature: 40499

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50072 CSA_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLFKSWLKNSLMAILLVTIFLGINTAGWTPSSNAALPSGNAITDGRALLRYALPINNK
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
PVRELQASLEDISAQLRANRRWGAVSKDLSKASRILDKPSQILTSVPEERQTQAETWINE
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHH
LKTGVAKVQEIAQSKDKEQVLLERAKLLNLVSLIEESMVKEFPFEVPEEYINLPQLKGRA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCE
TIAIKTNKGDLTVVVDGYSAPVTAGNFVDLVQRGFYNGLEFTRSEESYVLQTGDPPGKEQ
EEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCC
GFIDPKTGKYRAIPLEILVEGDKKPTYGITLEDAGRYLDMPVLPFSSFGALAMARPETEA
CCCCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCC
DGASSQVFFFLFEPELTPAGRNLLDGRYSVFGYLIEGRDILDTLKAGDKIESATVVQGLD
CCCCCEEEEEEECCCCCCCCCCHHCCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHH
NLVQPQSA
HHCCCCCC
>Mature Secondary Structure
MLNLFKSWLKNSLMAILLVTIFLGINTAGWTPSSNAALPSGNAITDGRALLRYALPINNK
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
PVRELQASLEDISAQLRANRRWGAVSKDLSKASRILDKPSQILTSVPEERQTQAETWINE
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHH
LKTGVAKVQEIAQSKDKEQVLLERAKLLNLVSLIEESMVKEFPFEVPEEYINLPQLKGRA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCE
TIAIKTNKGDLTVVVDGYSAPVTAGNFVDLVQRGFYNGLEFTRSEESYVLQTGDPPGKEQ
EEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCC
GFIDPKTGKYRAIPLEILVEGDKKPTYGITLEDAGRYLDMPVLPFSSFGALAMARPETEA
CCCCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCC
DGASSQVFFFLFEPELTPAGRNLLDGRYSVFGYLIEGRDILDTLKAGDKIESATVVQGLD
CCCCCEEEEEEECCCCCCCCCCHHCCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHH
NLVQPQSA
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]