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The map label for this gene is rplY

Identifier: 75908275

GI number: 75908275

Start: 2542940

End: 2543239

Strand: Direct

Name: rplY

Synonym: Ava_2054

Alternate gene names: 75908275

Gene position: 2542940-2543239 (Clockwise)

Preceding gene: 75908274

Following gene: 75908276

Centisome position: 39.95

GC content: 43.33

Gene sequence:

>300_bases
ATGGCTCTGACAGTCGAAACTAAAAAACGCCCAGAAGGCAGCAAGCCTAAAGCTTTGCGCCGCTCTGGATTTATCCCCGC
TAATTTGTACGGACACAACGGTAGAGAATCAATTTCTTTGGTAGTTGATGCCAAAGTAGTTGAAAGATTACTCAAAGCAG
CTGCTGTTAAAAAAACAGAAATCGAACTCAATATTCCTGAACTGGAATGGACTGGTAAAACCGTTCTTCAAGAAGTTCAG
ATACATCCAGCCAAAGGTACACCGTATCACATCAGCTTCCTTGCCACTGCCAAAGGCTAA

Upstream 100 bases:

>100_bases
TAAGTCAAAAGTCCAGAGTCCAGAGTTTTGTGACAACAGACAAATGTACAGACGCGATTAATCGCGTCTCTAACAACTAA
CAACCGACAATTAAACTAAT

Downstream 100 bases:

>100_bases
AGCAAGTGCAAAATTTGTCTTACTTGCCATTTAAAGTTTGTGATAATTGCTGATAAGCCAGGGTTAAAACCCTGGTTTTT
TGTTGTTTGCCTTTCTCAAC

Product: 50S ribosomal protein L25

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MALTVETKKRPEGSKPKALRRSGFIPANLYGHNGRESISLVVDAKVVERLLKAAAVKKTEIELNIPELEWTGKTVLQEVQ
IHPAKGTPYHISFLATAKG

Sequences:

>Translated_99_residues
MALTVETKKRPEGSKPKALRRSGFIPANLYGHNGRESISLVVDAKVVERLLKAAAVKKTEIELNIPELEWTGKTVLQEVQ
IHPAKGTPYHISFLATAKG
>Mature_98_residues
ALTVETKKRPEGSKPKALRRSGFIPANLYGHNGRESISLVVDAKVVERLLKAAAVKKTEIELNIPELEWTGKTVLQEVQI
HPAKGTPYHISFLATAKG

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_ANAVT (Q3MBG0)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_322571.1
- ProteinModelPortal:   Q3MBG0
- SMR:   Q3MBG0
- STRING:   Q3MBG0
- GeneID:   3680703
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_2054
- NMPDR:   fig|240292.3.peg.3134
- eggNOG:   COG1825
- HOGENOM:   HBG438940
- OMA:   NIPELEW
- ProtClustDB:   PRK05943
- BioCyc:   AVAR240292:AVA_2054-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01336
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- ProDom:   PD012503

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 10874; Mature: 10743

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTVETKKRPEGSKPKALRRSGFIPANLYGHNGRESISLVVDAKVVERLLKAAAVKKTE
CEEECCCCCCCCCCCCCHHHHCCCCCCEECCCCCCCEEEEEEEHHHHHHHHHHHHCCCEE
IELNIPELEWTGKTVLQEVQIHPAKGTPYHISFLATAKG
EEEECCCCCCCCHHHHHHHEEECCCCCCEEEEEEEEECC
>Mature Secondary Structure 
ALTVETKKRPEGSKPKALRRSGFIPANLYGHNGRESISLVVDAKVVERLLKAAAVKKTE
EEECCCCCCCCCCCCCHHHHCCCCCCEECCCCCCCEEEEEEEHHHHHHHHHHHHCCCEE
IELNIPELEWTGKTVLQEVQIHPAKGTPYHISFLATAKG
EEEECCCCCCCCHHHHHHHEEECCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA