Click here to switch to the map view.

The map label for this gene is ndhC

Identifier: 75908079

GI number: 75908079

Start: 2312382

End: 2312744

Strand: Direct

Name: ndhC

Synonym: Ava_1858

Alternate gene names: 75908079

Gene position: 2312382-2312744 (Clockwise)

Preceding gene: 109150028

Following gene: 75908080

Centisome position: 36.33

GC content: 47.66

Gene sequence:

>363_bases
GTGTTTGTCCTTAGCGGTTACGAGTACCTTCTAGGCTTTCTCATTATCTGTAGCCTAGTTCCTGCATTAGCGCTTTCCGC
GTCCAAGCTCCTACGACCAACTGGTAACAGCCTGGAACGCCGCACCACTTATGAATCTGGGATGGAACCAATCGGGGGAG
CCTGGATTCAGTTCAATATCCGCTACTATATGTTTGCCCTGGTCTTTGTCGTCTTTGATGTGGAGACTGTGTTCTTATAT
CCTTGGGCAGTTGCTTTTCACCGTCTGGGGCTATTGGCATTCATTGAAGCGCTGATTTTTATTGCAATTCTTGTAGTCGC
CCTAGTTTACGCATGGCGTAAAGGAGCATTGGAATGGTCTTGA

Upstream 100 bases:

>100_bases
CCTGAAATGCGTTTGTTGCGAAGATTTCAGAAAAGATAAAAAGATATAATGTGAAATAAAGTAACAGCCTTATTTACACC
ATAAGCGGTAGATATTCATT

Downstream 100 bases:

>100_bases
ATTCTGATTTAACTACTCAGGACAAAGAGCGCATCATCAACCCCATTGAACGTCCTACAGTCACTCAAGACCTTTCGGAA
AACGTTATTTTAACCACGGT

Product: NADH dehydrogenase subunit A

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit 3; NADH-plastoquinone oxidoreductase subunit 3; NDH-1 subunit 3; NDH-C

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MFVLSGYEYLLGFLIICSLVPALALSASKLLRPTGNSLERRTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLY
PWAVAFHRLGLLAFIEALIFIAILVVALVYAWRKGALEWS

Sequences:

>Translated_120_residues
MFVLSGYEYLLGFLIICSLVPALALSASKLLRPTGNSLERRTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLY
PWAVAFHRLGLLAFIEALIFIAILVVALVYAWRKGALEWS
>Mature_120_residues
MFVLSGYEYLLGFLIICSLVPALALSASKLLRPTGNSLERRTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLY
PWAVAFHRLGLLAFIEALIFIAILVVALVYAWRKGALEWS

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0838

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 3 (chain A)

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 3 family

Homologues:

Organism=Escherichia coli, GI1788625, Length=108, Percent_Identity=34.2592592592593, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NU3C_ANAVT (P0A3S6)

Other databases:

- EMBL:   AJ012181
- EMBL:   CP000117
- RefSeq:   YP_322375.1
- STRING:   P0A3S6
- GeneID:   3681810
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_1858
- eggNOG:   COG0838
- HOGENOM:   HBG605540
- OMA:   GERELTY
- PhylomeDB:   P0A3S6
- ProtClustDB:   PRK06602
- BioCyc:   AVAR240292:AVA_1858-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01394
- InterPro:   IPR023043
- InterPro:   IPR000440
- PANTHER:   PTHR11058

Pfam domain/function: PF00507 Oxidored_q4

EC number: 1.6.5.3

Molecular weight: Translated: 13621; Mature: 13621

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xfd5886c)-; HASH(0x100481c0)-; HASH(0x10048118)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVLSGYEYLLGFLIICSLVPALALSASKLLRPTGNSLERRTTYESGMEPIGGAWIQFNI
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHEEHH
RYYMFALVFVVFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILVVALVYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure
MFVLSGYEYLLGFLIICSLVPALALSASKLLRPTGNSLERRTTYESGMEPIGGAWIQFNI
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHEEHH
RYYMFALVFVVFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILVVALVYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA