Definition Nitrobacter winogradskyi Nb-255, complete genome.
Accession NC_007406
Length 3,402,093

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The map label for this gene is catD [H]

Identifier: 75676392

GI number: 75676392

Start: 2399789

End: 2400571

Strand: Direct

Name: catD [H]

Synonym: Nwi_2207

Alternate gene names: 75676392

Gene position: 2399789-2400571 (Clockwise)

Preceding gene: 75676383

Following gene: 75676394

Centisome position: 70.54

GC content: 62.45

Gene sequence:

>783_bases
ATGCCCATGATCTATGCGGATGGCTGCCTGCTGAATGTTTCCGTCGAGGGGCGCGATGGCGGCCCGACGCTGATGCTGTC
GAACGCGCTCGGCTGCACGCTGCAGATGTGGGAGCCGCAGATGGCGGCGCTGTCCAAGCTGTTCCGGATCATCCGCTATG
ACCGGCGCGGTCACGGCAAGTCCGGCGTTCCACCCGGTCCCTATTCGATGGAGCGCTTTGGCCGGGACGTGCTGGCGATT
CTCGATGACCTCAATATTGCGAGGACGCACTGGTGCGGATTGTCCATGGGCGGCATGGTCGGCCAATGGCTCGGAGCACA
TGCGCCGGAACGTTTCGACCGCATCATTCTCGCCAACACGAATTGCTACTATCCCGATCCGGCCAACTGGCACGCCCGCA
TCAAGACCGTGAAGGAAGGCGGCCTCGCCGCGATCGCCGAGACCGTGATCAGCGGCTGGCTGACCACGGGCTTTCGCGAA
CGCGAACCCCAGATCACCGCGAAGATCAAAGCCATGCTGAGCGCTTCCCCGGTGGAAGGCTATATCGCCTGCTGCGAGGC
GCTGAGCACCCTGGATCAGCGCGAGCTGCTGCCCCGCATCAAAAGCCCCACGCTGGTCATCGCCGGACGGCACGACCAGT
CTACACCTGTCGCGGCCGGGGAATACATCCGCAGCCGGATTCCTTCCGCCAGCATGACCATTCTCGATGCCGCACATATC
TCCAACGTCGAACAATCACATGCCTTCACCGAGGCGGTGACCGGATTTTTGATGCAGCAATAG

Upstream 100 bases:

>100_bases
AGCGTCCACCCTTGACGTAGAGGACGACGGCCGCAAAAGAAAGAGACGGCGATGGAATCGTTCCCGTTTCAAACGTTTGT
GGCTGGCAGGAGAAACGACA

Downstream 100 bases:

>100_bases
AGCGTTTTCGAGCGAAGCATGTCCTCGGGCTTGACCCGAGGATGGATGGCCTGTTCGCGTGAAGAAAACGCGTCAAATCA
ATATCTGACAGCCCCGCCTC

Product: alpha/beta hydrolase

Products: NA

Alternate protein names: 3-oxoadipate enol-lactonase II; Beta-ketoadipate enol-lactone hydrolase II; Enol-lactone hydrolase II [H]

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGKSGVPPGPYSMERFGRDVLAI
LDDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANTNCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFRE
REPQITAKIKAMLSASPVEGYIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHI
SNVEQSHAFTEAVTGFLMQQ

Sequences:

>Translated_260_residues
MPMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGKSGVPPGPYSMERFGRDVLAI
LDDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANTNCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFRE
REPQITAKIKAMLSASPVEGYIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHI
SNVEQSHAFTEAVTGFLMQQ
>Mature_259_residues
PMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGKSGVPPGPYSMERFGRDVLAIL
DDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANTNCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFRER
EPQITAKIKAMLSASPVEGYIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHIS
NVEQSHAFTEAVTGFLMQQ

Specific function: 3-hydroxyphenylpropionate degradation. [C]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR012790 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: =3.1.1.24 [H]

Molecular weight: Translated: 28471; Mature: 28340

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGK
CCEEEECCEEEEEEEECCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCC
SGVPPGPYSMERFGRDVLAILDDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANT
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHCCCCCHHHCEEEEECC
NCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFREREPQITAKIKAMLSASPVEG
CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHH
YIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHI
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
SNVEQSHAFTEAVTGFLMQQ
CCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGK
CEEEECCEEEEEEEECCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCC
SGVPPGPYSMERFGRDVLAILDDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANT
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHCCCCCHHHCEEEEECC
NCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFREREPQITAKIKAMLSASPVEG
CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHH
YIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHI
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
SNVEQSHAFTEAVTGFLMQQ
CCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8125318; 670169 [H]