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The map label for this gene is aphA [H]

Identifier: 75675946

GI number: 75675946

Start: 1923605

End: 1925221

Strand: Direct

Name: aphA [H]

Synonym: Nwi_1754

Alternate gene names: 75675946

Gene position: 1923605-1925221 (Clockwise)

Preceding gene: 75675945

Following gene: 75675947

Centisome position: 56.54

GC content: 60.17

Gene sequence:

>1617_bases
TTGCGCGCTGAGGGGTTTAGCAAAAGGCCGGTAAACGCGCGGGGGCGATTCAGACTGTCTCGATCCGAATACGATGAAAT
CGTAGCGCCAAGAGCCAGGACGTCACGACCCGCGCTCAGCCAGTTGCTCCTGCTGACGGCAGGTCTGGTGGTTCTGACGC
TGATCAGCGTCATTTCCATTTATCTTGTCAACAAGGCGCGCGACGACACTCGCTGGGTTCTCCGCAGCATGGAAGTCGAG
AATGAAATTTCACTGGCCCAGTTACAGATACAGCGCGCGGAAAGTTCGCAGCGCAGCTTTCTGCTGACGCAGCGCCCGGA
ATTCCGGGCTGCGTTCGAAGATGCATCAGGCCGGATTCCGCTGAGCTTCGAACGGCTGAGGGTACTGACCAAAGAGAATC
CCTACCAGCAACAGCGGCTCCAGCAAATGGTCCCGCTGACCAGTCAGCGGATCGAGCAGTTGCGGCAGAGCATTGATCTC
GCGCTGACGAACCGGCTGGATCAGGCCGTTGAGAGCGCGCGACGAGAGGCTGGTCAGGACGCGACGCGACAGATTCGCGA
TCTGGGGAACGAGATGCGAACCGAGGCAAATCGTCTGCTCGCGGCGCGGACGGCGTCAGCCGATGCCAGCCAATCGCGTT
CGGCGCTGATTACCAGCGTCGGCTCGGGGCTCGTTGTGCTGTTTGCCGGGCTCTCGATCTACCTTGTGCGGCGGTCGAAC
CGGGAACGCGACCTGGCTAACGCCCGGCTGCGCGATATCAATCTCAATCTGGAATCGACCATCGAGAAGCGGACCAGCGA
TCTGCGGGAAGCCAACGATGAAATCCAGCGTTTTGCCTATATCGTCAGCCACGACCTGCGCTCGCCGCTGGTCAACATCA
TGGGTTTCACCAGCGAACTCGAGGAACTGCGGGGCGACATATTCCGCCGGATCGCGGAGCTGAGCCGGCCGGATAGCCTG
CCGCCCCCTGGCGTGAACGATCCAGCCAGTGCGGCCGAACCGGTTCTCGATGGACCGGACGAGCAATTGTCGCAGGACTT
CACGGAGGCTCTGGGATTCATCAAGTCGTCGATCGCCAAGATGGATCGTCTCATCGGCGCGATCCTCAGCCTCACCCGCG
AGGGCCGGCGCGAATTTCATCCCGTTTCGATCGCCATGCGCGATCTGATCGAGGGCATTGTATCCACCGTGGCGCATCAG
GCCGCCGAAGCGGACGCCCAGATCCGGGTCGAGCCGTTGCCGGATATTGTTACCGACCGCATCGCGATCGAACAGATCTT
CTCCAATTTGATCGACAATGCCTTGAAATATCTCAAACCTGACGTTCCCGGCGATATCGCCATCAGTGGCCGGCGCAAGC
TGGGTTTTGCTATTTTTGAGATCACGGACAACGGTCGCGGCATCGATCCGAAGGATCACCAAAGGATTTTCGATCTGTTC
CGCCGGGCGGGGCCGCAGGATCGGCCGGGCCAGGGTATCGGACTGGCGCACGTCCGTGCACTGGTCCGAAGGCTCGGAGG
GACCATATCAGTCTCGTCGAAGCTTGGTGCCGGCACCACGTTTACAGTTACGCTGCCCAGCACATGGATGGTCACAAACC
GGGACGAACAATCATGA

Upstream 100 bases:

>100_bases
ATTGGCTGGAGCAGTATCTCTCCAGCGGCGGTCTAAAAGGAGCCTGAGCCGTTTCGAGCCCGGACCGGGATTGTTTTAGG
AACAAAAGACACGGAACCGA

Downstream 100 bases:

>100_bases
GTACGCCAGTCACCATCATCATGATCGAAGACGATGAGGGTCACGCCCGGCTGATCGAACGAAATATCCGGCGTTCCGGT
GTCAACAATGAGATCAAGTC

Product: bacteriophytochrome

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MRAEGFSKRPVNARGRFRLSRSEYDEIVAPRARTSRPALSQLLLLTAGLVVLTLISVISIYLVNKARDDTRWVLRSMEVE
NEISLAQLQIQRAESSQRSFLLTQRPEFRAAFEDASGRIPLSFERLRVLTKENPYQQQRLQQMVPLTSQRIEQLRQSIDL
ALTNRLDQAVESARREAGQDATRQIRDLGNEMRTEANRLLAARTASADASQSRSALITSVGSGLVVLFAGLSIYLVRRSN
RERDLANARLRDINLNLESTIEKRTSDLREANDEIQRFAYIVSHDLRSPLVNIMGFTSELEELRGDIFRRIAELSRPDSL
PPPGVNDPASAAEPVLDGPDEQLSQDFTEALGFIKSSIAKMDRLIGAILSLTREGRREFHPVSIAMRDLIEGIVSTVAHQ
AAEADAQIRVEPLPDIVTDRIAIEQIFSNLIDNALKYLKPDVPGDIAISGRRKLGFAIFEITDNGRGIDPKDHQRIFDLF
RRAGPQDRPGQGIGLAHVRALVRRLGGTISVSSKLGAGTTFTVTLPSTWMVTNRDEQS

Sequences:

>Translated_538_residues
MRAEGFSKRPVNARGRFRLSRSEYDEIVAPRARTSRPALSQLLLLTAGLVVLTLISVISIYLVNKARDDTRWVLRSMEVE
NEISLAQLQIQRAESSQRSFLLTQRPEFRAAFEDASGRIPLSFERLRVLTKENPYQQQRLQQMVPLTSQRIEQLRQSIDL
ALTNRLDQAVESARREAGQDATRQIRDLGNEMRTEANRLLAARTASADASQSRSALITSVGSGLVVLFAGLSIYLVRRSN
RERDLANARLRDINLNLESTIEKRTSDLREANDEIQRFAYIVSHDLRSPLVNIMGFTSELEELRGDIFRRIAELSRPDSL
PPPGVNDPASAAEPVLDGPDEQLSQDFTEALGFIKSSIAKMDRLIGAILSLTREGRREFHPVSIAMRDLIEGIVSTVAHQ
AAEADAQIRVEPLPDIVTDRIAIEQIFSNLIDNALKYLKPDVPGDIAISGRRKLGFAIFEITDNGRGIDPKDHQRIFDLF
RRAGPQDRPGQGIGLAHVRALVRRLGGTISVSSKLGAGTTFTVTLPSTWMVTNRDEQS
>Mature_538_residues
MRAEGFSKRPVNARGRFRLSRSEYDEIVAPRARTSRPALSQLLLLTAGLVVLTLISVISIYLVNKARDDTRWVLRSMEVE
NEISLAQLQIQRAESSQRSFLLTQRPEFRAAFEDASGRIPLSFERLRVLTKENPYQQQRLQQMVPLTSQRIEQLRQSIDL
ALTNRLDQAVESARREAGQDATRQIRDLGNEMRTEANRLLAARTASADASQSRSALITSVGSGLVVLFAGLSIYLVRRSN
RERDLANARLRDINLNLESTIEKRTSDLREANDEIQRFAYIVSHDLRSPLVNIMGFTSELEELRGDIFRRIAELSRPDSL
PPPGVNDPASAAEPVLDGPDEQLSQDFTEALGFIKSSIAKMDRLIGAILSLTREGRREFHPVSIAMRDLIEGIVSTVAHQ
AAEADAQIRVEPLPDIVTDRIAIEQIFSNLIDNALKYLKPDVPGDIAISGRRKLGFAIFEITDNGRGIDPKDHQRIFDLF
RRAGPQDRPGQGIGLAHVRALVRRLGGTISVSSKLGAGTTFTVTLPSTWMVTNRDEQS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=277, Percent_Identity=26.3537906137184, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788713, Length=297, Percent_Identity=25.2525252525253, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI145693157, Length=307, Percent_Identity=25.4071661237785, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786912, Length=117, Percent_Identity=37.6068376068376, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1790436, Length=341, Percent_Identity=23.4604105571848, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787894, Length=176, Percent_Identity=28.9772727272727, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789149, Length=312, Percent_Identity=22.7564102564103, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790567, Length=108, Percent_Identity=37.037037037037, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 60089; Mature: 60089

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAEGFSKRPVNARGRFRLSRSEYDEIVAPRARTSRPALSQLLLLTAGLVVLTLISVISI
CCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YLVNKARDDTRWVLRSMEVENEISLAQLQIQRAESSQRSFLLTQRPEFRAAFEDASGRIP
HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHCEEECCCCHHHHHHHCCCCCCC
LSFERLRVLTKENPYQQQRLQQMVPLTSQRIEQLRQSIDLALTNRLDQAVESARREAGQD
CCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ATRQIRDLGNEMRTEANRLLAARTASADASQSRSALITSVGSGLVVLFAGLSIYLVRRSN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHEEEECCC
RERDLANARLRDINLNLESTIEKRTSDLREANDEIQRFAYIVSHDLRSPLVNIMGFTSEL
CCHHHHHCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EELRGDIFRRIAELSRPDSLPPPGVNDPASAAEPVLDGPDEQLSQDFTEALGFIKSSIAK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MDRLIGAILSLTREGRREFHPVSIAMRDLIEGIVSTVAHQAAEADAQIRVEPLPDIVTDR
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
IAIEQIFSNLIDNALKYLKPDVPGDIAISGRRKLGFAIFEITDNGRGIDPKDHQRIFDLF
HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEEEEEECCCCCCCCHHHHHHHHHH
RRAGPQDRPGQGIGLAHVRALVRRLGGTISVSSKLGAGTTFTVTLPSTWMVTNRDEQS
HHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCCEEEEECCCCCC
>Mature Secondary Structure
MRAEGFSKRPVNARGRFRLSRSEYDEIVAPRARTSRPALSQLLLLTAGLVVLTLISVISI
CCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YLVNKARDDTRWVLRSMEVENEISLAQLQIQRAESSQRSFLLTQRPEFRAAFEDASGRIP
HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHCEEECCCCHHHHHHHCCCCCCC
LSFERLRVLTKENPYQQQRLQQMVPLTSQRIEQLRQSIDLALTNRLDQAVESARREAGQD
CCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ATRQIRDLGNEMRTEANRLLAARTASADASQSRSALITSVGSGLVVLFAGLSIYLVRRSN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHEEEECCC
RERDLANARLRDINLNLESTIEKRTSDLREANDEIQRFAYIVSHDLRSPLVNIMGFTSEL
CCHHHHHCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EELRGDIFRRIAELSRPDSLPPPGVNDPASAAEPVLDGPDEQLSQDFTEALGFIKSSIAK
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MDRLIGAILSLTREGRREFHPVSIAMRDLIEGIVSTVAHQAAEADAQIRVEPLPDIVTDR
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
IAIEQIFSNLIDNALKYLKPDVPGDIAISGRRKLGFAIFEITDNGRGIDPKDHQRIFDLF
HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEEEEEECCCCCCCCHHHHHHHHHH
RRAGPQDRPGQGIGLAHVRALVRRLGGTISVSSKLGAGTTFTVTLPSTWMVTNRDEQS
HHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]