| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
Click here to switch to the map view.
The map label for this gene is yejA [C]
Identifier: 75675702
GI number: 75675702
Start: 1638492
End: 1640354
Strand: Direct
Name: yejA [C]
Synonym: Nwi_1510
Alternate gene names: 75675702
Gene position: 1638492-1640354 (Clockwise)
Preceding gene: 75675700
Following gene: 75675703
Centisome position: 48.16
GC content: 62.1
Gene sequence:
>1863_bases GTGAGCAAGTTCGAATCAAAATGGACCCGGTATTGCCGGCCGCCGCGCGAGCGCTGCCGGACGGTGGTGGGTTTGGCGCT CATAGTCGGGCTGCTCGCCGCCGGGTACCAGGAGGTTTCCGCGGCGGATTCCGGTTACGCCATCGCGATGCATGGCGAAC CGGCCCTGCCGCCTGATTTCAGCCGGATGCCCTATGCCGATCCGGACGCGCCCAAGGGTGGCCGGCTGGTTCAAAGTGTT CCCGGTAGTTTCGACAGCCTCAATCCCTTCATCGTCAAAGGCGTCGCGCTTCAGCAAATTCGGGGTTTCGTGGTCGAGAG CCTGATGGCCCGTGGTCACGACGAACCCTTCACGCTCTACGGTCTGCTGGCGGAAAGGATTGAAACCGACGATGCCCGCA CCTACGCCACCTTTCATCTGAATCCACAGGCGCGCTTTTACGACGGGCGGTCCGTCCGTGCCGAAGACGTGCTCTTTTCC TGGCAACTTCTCCGGGACAAGGGCCGACCCAACCATCGTCAGTATTATTCGAAGGTTGCGACGGCGGAGGCGATCGATGA GCGCACGGTGCGTTTCGATTTCGGGGGAACCACGGATCGCGAACTGCCCCTGATCCTCGGCCTGATGCCTGTTCTGCCGA AACATGCCGTCGATGCCGCCACTTTCGAGCAGACCTCGATGACCGCCCCGCTGGGGTCCGGGCCGTATCGCGTGACCGCC GTCAAGCCTGGAGCCAGCGTGACGCTGACGCGCAACCCGGATTATTGGGGACGCAACCTGCCGGTCAATCGCGGCCTGTG GAACTTCGACGAGATCAGGTTCGACTACTACCGCGAAGCCAACAGTCAGTTCGAGGCGTTCAAGCGCGGTCTGTATGACT TTCGTGTCGAGAGTGAACCACTGCGCTGGCACGAAGGCTACAACTTCCCGGCAGCGGGCGATGGTCAGCTTGTCCGCGAA GCTATTAAGACCGGCCTGCCCGCGCCCTCGGAATATCTGGTGTTCAATACGCGGCGGCCGATGTTTTCCGACATTCGCGT TCGCGAGGCGCTGACGCTGCTGTTCGATTTCGAGTGGATCAACCGAAACTATTTTTTCGGACTCTATAGTCGCGCCGGCG GCTTCTTCGCGGGATCGGAACTGTCCGCCTACGCGCGCGCCGCCGCCGACGGAGAGCGGTCGCTGCTGAAGCCGTTTCCA TCGGCCGTGCGAAGCGATATCCTCGACGGCAGCTACCGCCTTCCCGTGACCGACGGTTCAGGCCGGGACCGCGAAGCCTT ACGCGCCGCTCTCGCGCTTCTGTCGCAGGCAGGTTACGAGTTTGACGGCACGGTCCTGCGCCATCGCTCGACCAAGGCTC CCCTTGCCTTTGAAATTCTGGTGACGACCCGCGATCAGGAGCGGATCGCGCTAGCTTACGCGCGCGATCTCAAGCGCGCC GGCATTGAGGTGTCCGTGCGCTCGGTCGATGGCGTGCAGTTCGATCAGCGTCGGCTGGCGTTTGATTTTGACATGATCCA GAACCGCTGGGATCAATCGCTGTCGCCCGGCAACGAACAGTCCTTCTACTGGGGCAGCGAAGCCGCCGACATTCCGGGCA CCCGCAATTACATGGGCGTGAAGAATCCCGCGATCGACGCCATGATCGCCGCCATGCTCAAGGCCAGGGAGCGGCCGGGC TTCGTGGATGCGGTACGCGCGCTCGACCGGGTCCTGATGTCCGGATTTTACGTGATTCCGGTTTACAACGTTCGAGAACA ATGGATCGCGCGCTGGAATCGGATAGAACGACCGGCAGCGACCGCGTTGACTGGATACATCCCTGAAACTTGGTGGCGAA GGCCGCCGAAGCCCGGCAAGTGA
Upstream 100 bases:
>100_bases TGCCCGCCTTCAATACTAGGGCGCATAAAAAGATCAATGGCAACATACGCTTTTGACGTGCCTTTCAAACCGCGTCGCGG CGGTTGTGATAAAATTTCTT
Downstream 100 bases:
>100_bases CTTCGTGCTCCAGAACAATTCATCGCCTACGCTGGATGAACTCTTCGACCGCATCCTCGTCCGGCAGCCGGACCGGCCGG CGCTGATCGATCCGCCGGAC
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 620; Mature: 619
Protein sequence:
>620_residues MSKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDFSRMPYADPDAPKGGRLVQSV PGSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLYGLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFS WQLLRDKGRPNHRQYYSKVATAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTA VKPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEPLRWHEGYNFPAAGDGQLVRE AIKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWINRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFP SAVRSDILDGSYRLPVTDGSGRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRA GIEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGVKNPAIDAMIAAMLKARERPG FVDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAATALTGYIPETWWRRPPKPGK
Sequences:
>Translated_620_residues MSKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDFSRMPYADPDAPKGGRLVQSV PGSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLYGLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFS WQLLRDKGRPNHRQYYSKVATAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTA VKPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEPLRWHEGYNFPAAGDGQLVRE AIKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWINRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFP SAVRSDILDGSYRLPVTDGSGRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRA GIEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGVKNPAIDAMIAAMLKARERPG FVDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAATALTGYIPETWWRRPPKPGK >Mature_619_residues SKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDFSRMPYADPDAPKGGRLVQSVP GSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLYGLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFSW QLLRDKGRPNHRQYYSKVATAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTAV KPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEPLRWHEGYNFPAAGDGQLVREA IKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWINRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFPS AVRSDILDGSYRLPVTDGSGRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRAG IEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGVKNPAIDAMIAAMLKARERPGF VDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAATALTGYIPETWWRRPPKPGK
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=599, Percent_Identity=35.0584307178631, Blast_Score=353, Evalue=1e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 70025; Mature: 69894
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDF CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCCCCC SRMPYADPDAPKGGRLVQSVPGSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLY CCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH GLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFSWQLLRDKGRPNHRQYYSKVA HHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH TAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTA HHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCHHHCCHHHHHHHCCCCCCCCCCEEEEE VKPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEP ECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCHHEEEECCCC LRWHEGYNFPAAGDGQLVREAIKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWI CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEC NRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFPSAVRSDILDGSYRLPVTDGS CCCEEEEEHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHCCCCEEEEECCCC GRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRA CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHC GIEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGV CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCC KNPAIDAMIAAMLKARERPGFVDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAA CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHCCCCHH TALTGYIPETWWRRPPKPGK HHHHCCCCHHHCCCCCCCCC >Mature Secondary Structure SKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDF CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCCCCC SRMPYADPDAPKGGRLVQSVPGSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLY CCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH GLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFSWQLLRDKGRPNHRQYYSKVA HHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH TAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTA HHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCHHHCCHHHHHHHCCCCCCCCCCEEEEE VKPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEP ECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCHHEEEECCCC LRWHEGYNFPAAGDGQLVREAIKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWI CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEC NRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFPSAVRSDILDGSYRLPVTDGS CCCEEEEEHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHCCCCEEEEECCCC GRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRA CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHC GIEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGV CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCC KNPAIDAMIAAMLKARERPGFVDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAA CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHCCCCHH TALTGYIPETWWRRPPKPGK HHHHCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA