| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is dat [H]
Identifier: 75675640
GI number: 75675640
Start: 1578806
End: 1579663
Strand: Direct
Name: dat [H]
Synonym: Nwi_1448
Alternate gene names: 75675640
Gene position: 1578806-1579663 (Clockwise)
Preceding gene: 75675639
Following gene: 75675641
Centisome position: 46.41
GC content: 63.17
Gene sequence:
>858_bases ATGTCGCGCATCGCTTATGTCAACGGCCGGTATCGCGATCTGCGCGATGCCTGCGTCAACGTCGAGGATCGCGGCTACCA GTTTGCCGACGGTGTTTACGAGGTTTGCGAGGTGCGCGGCGCGAGGCTGGTTGATTTTCCCCGGCACATGGCCCGGTTGC AGCGGTCGATGCGCGAATTGCGGATCGCCGAACCGATGCCGATCACGGCGCTCGGCATCATCATGCGCGAGGTCGTGCGG CGGAATCGCGTGACCTACGGAATCGTGTATCTGCAGGTGACTCGCGGCGTGGCCCGGCGCGATCACGCTTTTCCGCCGAA CCCGGTCAAGCCGGGCGTCGTCGTCACGGCCCGCGCGCTGGATGACGAGAAAAAGCAGCAAGCCGCCGCCGCCGGCATTT CTGTCATTACTCTGCCGGAGAATCGTTGGCCGCGGGTGGATATCAAGTCAGTGGCGCTGCTGCCGAATGTTTTGGCAAAG CAGCATGCGCGGGAAAAGGGAGCCCATGAGGCGTGGTACGTCGATAGTGACGGATTCGTCACCGAAGGCGCGTCGAGCAA CGCCTGGATCGTGACGAAGGACGGCCGGGCCGTCACCCGGTCAGTGGACCAGGGCATTCTGGCGGGCATCACGCGGGCTG TTCTCATGGAAGTCCTGAGGGCTTTTCAGATCAGGCTTGAAGAGCGCCCGTTCACGCCGGCGGAAGCCCGCGAGGCGGCC GAAGCGTTTGTAACCTCGGCTTCTCAGATCGTCATGCCCGTGGTCGCGATCGACGGCCAGGTGGTGGGGGATGGTCGGCC TGGCGGTATTGCAAGGCGGCTTCGAGAGGAATTCCACCGCTTTTCAGCATTTTCCTGA
Upstream 100 bases:
>100_bases GCGCTCGGCGTCAACTAGATTGTTGCTCTGACGCATGGTCATCCCGCGAAATCGTATTCATCTCGATCGAGAACAGGTAA CGCTGAGGTAAACCTGCTGA
Downstream 100 bases:
>100_bases TGGTTTTTGTGTATCCGGGTAAACCCGCGGACCCGAACCGGCTTGCGTAACATCATACTCTGCCTTCTAATCCGGGGGGC CGGGTCCATGAGGAGGATCT
Product: D-amino acid aminotransferase
Products: NA
Alternate protein names: D-amino acid aminotransferase; D-amino acid transaminase; DAAT; D-aspartate aminotransferase [H]
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSRIAYVNGRYRDLRDACVNVEDRGYQFADGVYEVCEVRGARLVDFPRHMARLQRSMRELRIAEPMPITALGIIMREVVR RNRVTYGIVYLQVTRGVARRDHAFPPNPVKPGVVVTARALDDEKKQQAAAAGISVITLPENRWPRVDIKSVALLPNVLAK QHAREKGAHEAWYVDSDGFVTEGASSNAWIVTKDGRAVTRSVDQGILAGITRAVLMEVLRAFQIRLEERPFTPAEAREAA EAFVTSASQIVMPVVAIDGQVVGDGRPGGIARRLREEFHRFSAFS
Sequences:
>Translated_285_residues MSRIAYVNGRYRDLRDACVNVEDRGYQFADGVYEVCEVRGARLVDFPRHMARLQRSMRELRIAEPMPITALGIIMREVVR RNRVTYGIVYLQVTRGVARRDHAFPPNPVKPGVVVTARALDDEKKQQAAAAGISVITLPENRWPRVDIKSVALLPNVLAK QHAREKGAHEAWYVDSDGFVTEGASSNAWIVTKDGRAVTRSVDQGILAGITRAVLMEVLRAFQIRLEERPFTPAEAREAA EAFVTSASQIVMPVVAIDGQVVGDGRPGGIARRLREEFHRFSAFS >Mature_284_residues SRIAYVNGRYRDLRDACVNVEDRGYQFADGVYEVCEVRGARLVDFPRHMARLQRSMRELRIAEPMPITALGIIMREVVRR NRVTYGIVYLQVTRGVARRDHAFPPNPVKPGVVVTARALDDEKKQQAAAAGISVITLPENRWPRVDIKSVALLPNVLAKQ HAREKGAHEAWYVDSDGFVTEGASSNAWIVTKDGRAVTRSVDQGILAGITRAVLMEVLRAFQIRLEERPFTPAEAREAAE AFVTSASQIVMPVVAIDGQVVGDGRPGGIARRLREEFHRFSAFS
Specific function: Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha- keto acid in
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI48994963, Length=294, Percent_Identity=26.1904761904762, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787338, Length=242, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=3e-12,
Paralogues:
None
Copy number: 2342 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 11,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001544 - InterPro: IPR018300 - InterPro: IPR005784 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =2.6.1.21 [H]
Molecular weight: Translated: 31762; Mature: 31631
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIAYVNGRYRDLRDACVNVEDRGYQFADGVYEVCEVRGARLVDFPRHMARLQRSMREL CCCEEEECCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHH RIAEPMPITALGIIMREVVRRNRVTYGIVYLQVTRGVARRDHAFPPNPVKPGVVVTARAL HCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHCCCCCCCCCCCCCEEEEEEHH DDEKKQQAAAAGISVITLPENRWPRVDIKSVALLPNVLAKQHAREKGAHEAWYVDSDGFV CHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCE TEGASSNAWIVTKDGRAVTRSVDQGILAGITRAVLMEVLRAFQIRLEERPFTPAEAREAA ECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH EAFVTSASQIVMPVVAIDGQVVGDGRPGGIARRLREEFHRFSAFS HHHHHHHHHHHHEEEEECCEEEECCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure SRIAYVNGRYRDLRDACVNVEDRGYQFADGVYEVCEVRGARLVDFPRHMARLQRSMREL CCEEEECCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHH RIAEPMPITALGIIMREVVRRNRVTYGIVYLQVTRGVARRDHAFPPNPVKPGVVVTARAL HCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHCCCCCCCCCCCCCEEEEEEHH DDEKKQQAAAAGISVITLPENRWPRVDIKSVALLPNVLAKQHAREKGAHEAWYVDSDGFV CHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCE TEGASSNAWIVTKDGRAVTRSVDQGILAGITRAVLMEVLRAFQIRLEERPFTPAEAREAA ECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH EAFVTSASQIVMPVVAIDGQVVGDGRPGGIARRLREEFHRFSAFS HHHHHHHHHHHHEEEEECCEEEECCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]