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The map label for this gene is rarA [H]

Identifier: 75675584

GI number: 75675584

Start: 1517348

End: 1518679

Strand: Direct

Name: rarA [H]

Synonym: Nwi_1392

Alternate gene names: 75675584

Gene position: 1517348-1518679 (Clockwise)

Preceding gene: 75675583

Following gene: 75675585

Centisome position: 44.6

GC content: 65.69

Gene sequence:

>1332_bases
ATGAGCCCGAAGCGCCAGCACGACTCCAGGAGCCTGTTCGCCGCGGCGGGCCTGGAGCGTGATGCGCCGCATCCGCTGCC
GGACAGGCTGCGGCCGCAGATGCTTTCGGACGTCGTCGGGCAGGATCACATTCTGGGGCCGGACGGCGCGCTGACCCGGA
TGCTGGAAACCCGCACGCTGGGCTCGCTCATCTTCTGGGGACCGCCGGGGACCGGCAAGACCACGGTGGCGCGGCTGCTG
GCGGACGCGACCGCGCTGCATTTCGAGCAACTGTCGGCGGTGTTCTCCGGCGTCAATGATCTGAAGAAGGCATTCGAGGC
CGCCCGCGCGCGCCGCGAGTCGGGGACGGGTACGCTTCTGTTTGTCGACGAGGTGCATCGCTTCAATCGCGCGCAACAGG
ATTCGTTTCTGCCTGTCATGGAGGACGGAACCGTCGTTCTGGTTGGCGCGACCACCGAGAACCCGTCGTTCGAACTCAAC
GCGGCGCTGTTGTCGCGGGCGCGCGTGCTGGTGTTTCGTTCGCTTGACGCGCTGGCGGTCGAGAAATTGTTCGTCCGCGC
CGAAGAGGTCGAGGGCAAGCCGCTGCCGCTTGATGCAGAAGCGCGCGCGGCGCTGGTGCGCATGGCCGACGGGGATGGGC
GAGCGGCGCTCACGCTGGTCGAGGAAGTCTGGCGGTCGGCGCGCGAGGGCGAGGTCTTCGATGCCGGTCAGTTACAGGGC
GTGCTGCAACGCCGCGCGCCGATCTACGACAAATCCGCCGACGGCCACTACAACCTGATTTCCGCCTTGCACAAGTCGGT
GCGGGGCTCCGATCCCGATGCGGCGCTGTACTATCTGGCGCGGATGATCGAGGCGGGCGAGGACCCGTTGTTTCTCGCGC
GCCGCGTGGTGCGGATGGCGGTGGAGGATATCGGGCTTGCGGATCCTCAGGCGCTGGTGATCTGCAACGCGGCCAAGGAT
GCCTATGATTTCCTCGGCTCGCCGGAAGGCGAACTCGCAATCGCGCAGGCGGTGATCTATCTCGCGACCGCGCCGAAGTC
CAACGCCGCCTACAAGGCGTTCGGCGCGGCGATGCGCGTCGCGAAGGACGCCGGCTCTCTCTTGCCGCCGAAGCACATCC
TGAACGCGCCGACCAAACTGATGAAATCCGAAGGTTATGGCGGCGGCTATCAATACGATCACGATATGCCGGACGCGTTT
TCCGGACAGGATTACTTTCCGGAGACGCTCGGCCGCCAGACCTTTTATGATCCGCCGGATCGTGGGTTCGAGCGCGAAAT
CCGCAAGCGAATGGATTACTGGGCGAAACTGCGGCGGGAGCGCGCGTCATGA

Upstream 100 bases:

>100_bases
TCAAGACCACCGATCTCGAACAAGCCGTTCGCGAAGCGAGGCGGCTCTGGCGGATCACGCTGATGCGCAGCGGCCAGCAG
ATTCAAGTCATGCTGGGCGG

Downstream 100 bases:

>100_bases
CGGGCTTGATCGACGCCATGGTCAGACTGCCGATCCACGATCCCGACAAATTTGCGCGACGGCGTACGTTCAAGGACTGT
TTCAGGACGGAGCGGCTTAT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSPKRQHDSRSLFAAAGLERDAPHPLPDRLRPQMLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLL
ADATALHFEQLSAVFSGVNDLKKAFEAARARRESGTGTLLFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELN
AALLSRARVLVFRSLDALAVEKLFVRAEEVEGKPLPLDAEARAALVRMADGDGRAALTLVEEVWRSAREGEVFDAGQLQG
VLQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMIEAGEDPLFLARRVVRMAVEDIGLADPQALVICNAAKD
AYDFLGSPEGELAIAQAVIYLATAPKSNAAYKAFGAAMRVAKDAGSLLPPKHILNAPTKLMKSEGYGGGYQYDHDMPDAF
SGQDYFPETLGRQTFYDPPDRGFEREIRKRMDYWAKLRRERAS

Sequences:

>Translated_443_residues
MSPKRQHDSRSLFAAAGLERDAPHPLPDRLRPQMLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLL
ADATALHFEQLSAVFSGVNDLKKAFEAARARRESGTGTLLFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELN
AALLSRARVLVFRSLDALAVEKLFVRAEEVEGKPLPLDAEARAALVRMADGDGRAALTLVEEVWRSAREGEVFDAGQLQG
VLQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMIEAGEDPLFLARRVVRMAVEDIGLADPQALVICNAAKD
AYDFLGSPEGELAIAQAVIYLATAPKSNAAYKAFGAAMRVAKDAGSLLPPKHILNAPTKLMKSEGYGGGYQYDHDMPDAF
SGQDYFPETLGRQTFYDPPDRGFEREIRKRMDYWAKLRRERAS
>Mature_442_residues
SPKRQHDSRSLFAAAGLERDAPHPLPDRLRPQMLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLLA
DATALHFEQLSAVFSGVNDLKKAFEAARARRESGTGTLLFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNA
ALLSRARVLVFRSLDALAVEKLFVRAEEVEGKPLPLDAEARAALVRMADGDGRAALTLVEEVWRSAREGEVFDAGQLQGV
LQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMIEAGEDPLFLARRVVRMAVEDIGLADPQALVICNAAKDA
YDFLGSPEGELAIAQAVIYLATAPKSNAAYKAFGAAMRVAKDAGSLLPPKHILNAPTKLMKSEGYGGGYQYDHDMPDAFS
GQDYFPETLGRQTFYDPPDRGFEREIRKRMDYWAKLRRERAS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=42.4311926605505, Blast_Score=315, Evalue=5e-86,
Organism=Homo sapiens, GI18426904, Length=436, Percent_Identity=38.5321100917431, Blast_Score=262, Evalue=4e-70,
Organism=Escherichia coli, GI1787119, Length=426, Percent_Identity=47.1830985915493, Blast_Score=375, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6324111, Length=435, Percent_Identity=39.7701149425287, Blast_Score=295, Evalue=1e-80,
Organism=Saccharomyces cerevisiae, GI6324039, Length=205, Percent_Identity=25.8536585365854, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48613; Mature: 48482

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPKRQHDSRSLFAAAGLERDAPHPLPDRLRPQMLSDVVGQDHILGPDGALTRMLETRTL
CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHH
GSLIFWGPPGTGKTTVARLLADATALHFEQLSAVFSGVNDLKKAFEAARARRESGTGTLL
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEE
FVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFRSLDALAV
EHHHHHHHCHHCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EKLFVRAEEVEGKPLPLDAEARAALVRMADGDGRAALTLVEEVWRSAREGEVFDAGQLQG
HHHHHHHHHCCCCCCCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
VLQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMIEAGEDPLFLARRVVRMA
HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VEDIGLADPQALVICNAAKDAYDFLGSPEGELAIAQAVIYLATAPKSNAAYKAFGAAMRV
HHHCCCCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHH
AKDAGSLLPPKHILNAPTKLMKSEGYGGGYQYDHDMPDAFSGQDYFPETLGRQTFYDPPD
HHHCCCCCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
RGFEREIRKRMDYWAKLRRERAS
CCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPKRQHDSRSLFAAAGLERDAPHPLPDRLRPQMLSDVVGQDHILGPDGALTRMLETRTL
CCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHH
GSLIFWGPPGTGKTTVARLLADATALHFEQLSAVFSGVNDLKKAFEAARARRESGTGTLL
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEE
FVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFRSLDALAV
EHHHHHHHCHHCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EKLFVRAEEVEGKPLPLDAEARAALVRMADGDGRAALTLVEEVWRSAREGEVFDAGQLQG
HHHHHHHHHCCCCCCCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
VLQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMIEAGEDPLFLARRVVRMA
HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VEDIGLADPQALVICNAAKDAYDFLGSPEGELAIAQAVIYLATAPKSNAAYKAFGAAMRV
HHHCCCCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHH
AKDAGSLLPPKHILNAPTKLMKSEGYGGGYQYDHDMPDAFSGQDYFPETLGRQTFYDPPD
HHHCCCCCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
RGFEREIRKRMDYWAKLRRERAS
CCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]