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The map label for this gene is pomA [H]

Identifier: 75675429

GI number: 75675429

Start: 1360307

End: 1361080

Strand: Direct

Name: pomA [H]

Synonym: Nwi_1236

Alternate gene names: 75675429

Gene position: 1360307-1361080 (Clockwise)

Preceding gene: 75675428

Following gene: 75675430

Centisome position: 39.98

GC content: 60.72

Gene sequence:

>774_bases
ATGGATATCATGACCGGTGCCGGGCTTGCTTTCGGCATGATCGTAATTGCCATGATGGTCTTTATGGGTGGCGATCTGCA
CATGTTCGTCAGCGAACATGCCATGATCATCATTTTCGGCGGCTCGATCGCCGCGACCATGATCCGCTTCCCGCTCGGCG
CGATTTTGCATGGCCTGCCGCTTGGCGCCAAATACGCCTTCACGATGAGCCGGCTGTCGGCGCGCGACCTTGTCGATGAA
CTGGCGCGCATCGCCGAGATCTCCCGCAAGCAGGGACCGGTCGGCCTGGAAAAGGTCGAAACCACCGAGCCGTTTCTCGC
CAAGGGAGTCCGTTTCGTCGCGGACGGTTACGATCTCGAATTCATCCGCGATAATCTCGAGCGCGATCGCGACAACTTTC
TCATGCATCTCGACGAGGGTAGCAAGATCTACCGCGCGATCGGCGACTGCGCGCCGGCCTTCGGCATGATCGGCACCCTG
ATCGGCATGGTGCAGATGTTCGCCAACATGACCGATCCTTCCAAGCTCGGACCGTTCATGGCGACGGCGCTGCTCGCGAC
GCTTTATGGCGCGCTCGTCGCCAACCTGTTCTGCCTGCCGATCGCGGACAAGCTCCACGGCAAGCTGCTGGACGAGGAGA
CCAATCGCACCCTGATCATCGACGGCATCCTGATGATCCGGGATTCGAAGAGCCCGGCGCTGGTGCGGGAAATGCTGCTG
GCCTATCTGCCGGAAAAACACCGCCACGAAGAAGGCGAGCCGGTTCCGGCGTGA

Upstream 100 bases:

>100_bases
AACCGGTCCTTAATGGCGCGAAAGCTAGGGTGACGATGCGTGACTCAGAACGGTCGCGCCGCCGTCCAGGATGGCCGGTC
GAGTATGCGTGGAGTTCATC

Downstream 100 bases:

>100_bases
CCTGACGTCGATTCGGGAAACCTGCGATGGCCAAGAAGAAGCGAGGCGACGCGCACGGCGGAGGTCACGGCTGGTTCGTC
ACGTTCGCGGATCTGATGGG

Product: MotA/TolQ/ExbB proton channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MDIMTGAGLAFGMIVIAMMVFMGGDLHMFVSEHAMIIIFGGSIAATMIRFPLGAILHGLPLGAKYAFTMSRLSARDLVDE
LARIAEISRKQGPVGLEKVETTEPFLAKGVRFVADGYDLEFIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTL
IGMVQMFANMTDPSKLGPFMATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL
AYLPEKHRHEEGEPVPA

Sequences:

>Translated_257_residues
MDIMTGAGLAFGMIVIAMMVFMGGDLHMFVSEHAMIIIFGGSIAATMIRFPLGAILHGLPLGAKYAFTMSRLSARDLVDE
LARIAEISRKQGPVGLEKVETTEPFLAKGVRFVADGYDLEFIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTL
IGMVQMFANMTDPSKLGPFMATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL
AYLPEKHRHEEGEPVPA
>Mature_257_residues
MDIMTGAGLAFGMIVIAMMVFMGGDLHMFVSEHAMIIIFGGSIAATMIRFPLGAILHGLPLGAKYAFTMSRLSARDLVDE
LARIAEISRKQGPVGLEKVETTEPFLAKGVRFVADGYDLEFIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTL
IGMVQMFANMTDPSKLGPFMATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL
AYLPEKHRHEEGEPVPA

Specific function: PomA and PomB comprise the stator element of the flagellar motor complex. Required for rotation of the flagellar motor. Probable transmembrane proton channel [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell inner membrane; Multi- pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 28162; Mature: 28162

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
7.0 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIMTGAGLAFGMIVIAMMVFMGGDLHMFVSEHAMIIIFGGSIAATMIRFPLGAILHGLP
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCC
LGAKYAFTMSRLSARDLVDELARIAEISRKQGPVGLEKVETTEPFLAKGVRFVADGYDLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCHHHHHCCCCHH
FIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHH
AYLPEKHRHEEGEPVPA
HHCCHHHCCCCCCCCCC
>Mature Secondary Structure
MDIMTGAGLAFGMIVIAMMVFMGGDLHMFVSEHAMIIIFGGSIAATMIRFPLGAILHGLP
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHHHCCC
LGAKYAFTMSRLSARDLVDELARIAEISRKQGPVGLEKVETTEPFLAKGVRFVADGYDLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCHHHHHCCCCHH
FIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHH
AYLPEKHRHEEGEPVPA
HHCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9260952 [H]