| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is fatA [H]
Identifier: 75675074
GI number: 75675074
Start: 954772
End: 955908
Strand: Direct
Name: fatA [H]
Synonym: Nwi_0879
Alternate gene names: 75675074
Gene position: 954772-955908 (Clockwise)
Preceding gene: 75675073
Following gene: 75675075
Centisome position: 28.06
GC content: 55.23
Gene sequence:
>1137_bases GTGACGACCGCGGCCACGACGACCTTTAGTCTCGATACCGTCGACAGCAATCAAGCCGCCCTTAATGGCCGCTTTGAGAC GAGTTCGATCAAGCACGATCTGTTTCTCGCCACCAATGGTTTCCTTTGGAATCGCTACACGCCGTTCAGAAGAGGCGCGA TCACAGTCGGCAGCGCTAGCCTCAGCAATCCCTCGATCTTCAGCGAGCCAAATTTTCCGGATTTCAAGGACCGCTATCGC TCCGTATACACCTTCCAGCAATCTGTCACGCTGGGCGACACCATTGCTCTCAACGAAAGATGGTCGATACTGGCCGCAGT CAGCAATAGCTGGATCGAAACCTCCAACTACAACAACGCGGGCGGCGTCACAGGCGGATACAGCGCCAGCGGATGGAGTC CGCTCGGCAGCATTATGTTCAAACCCGGGGAGAACGTGACGACCTATGTCACTTACGCGAACAGCTTGCAGCAAGGCGAC AGTGCTCCGGCCGGAACAGTTAATCAGGGCGAAGCTCTGGCCCCATTTCGCAGCAATCAGTATGAGTTAGGCGCCAAGTT CGATTTCGGGCGCTTCAACTTGAATGCCGCGCTCTACAGAATTGAGCGACCTTATGCCTACACCGGATCGGATAACGTTT TCTCCATGAAACGAACTCAGATCAATCGTGGCGTTGAACTGATGGCGTCTGGGGCCATCAATGATGAATGGACGGTGTTC GGCGGAATGACCTTCATTGATCCTCGGCTCCATAATATGGGTTCGCCCCAGACCGAGGGGCGGCGCATTCTGGGCCTGTC ACAGTTCGTCATGAACTGTCTGGTCGAGTATCATGTTCCTTCTGTTCAAGGACTGACGTTCACCGCGAACGTCAATTATG GGACGAACCGTCCGACCGATTACGCGAATACGTCCTTTGTCCCGGACTATGCTGTACTCAATCTCGGCATGCGCTATGCG CAGCTCATTGCCGGCAAGCCGGTCACGTTCAGGTTTGACGTTTTCAACGTCACGGATCTCCACTATTGGGCAAACGAGAC GCCGGCCGCCCAGAACGGATATAACGCGACAGGTTCAGCCACCGGCATCCTGGGCGCGCCGCGAACTATTCGTGCCTCGC TACAGGTTGAACTATGA
Upstream 100 bases:
>100_bases CAATGAGAACTGGCGCTTCTCCGCGGCCGTTTCGCGTAACACCAGCGATCGCGCTTCGACGGTTCCGACAAATACAATCA GGAGTAACGCTGGAAATTAC
Downstream 100 bases:
>100_bases GAATCCGAGCCGTCTCAGCCGCATGTGCAGGCATTCTCATCCTGACGTCGGTCGAGGCGTATTGCGCGGATGCGCAGGAA CAAGCAGCCACGTTGCGGGT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: OM2 [H]
Number of amino acids: Translated: 378; Mature: 377
Protein sequence:
>378_residues MTTAATTTFSLDTVDSNQAALNGRFETSSIKHDLFLATNGFLWNRYTPFRRGAITVGSASLSNPSIFSEPNFPDFKDRYR SVYTFQQSVTLGDTIALNERWSILAAVSNSWIETSNYNNAGGVTGGYSASGWSPLGSIMFKPGENVTTYVTYANSLQQGD SAPAGTVNQGEALAPFRSNQYELGAKFDFGRFNLNAALYRIERPYAYTGSDNVFSMKRTQINRGVELMASGAINDEWTVF GGMTFIDPRLHNMGSPQTEGRRILGLSQFVMNCLVEYHVPSVQGLTFTANVNYGTNRPTDYANTSFVPDYAVLNLGMRYA QLIAGKPVTFRFDVFNVTDLHYWANETPAAQNGYNATGSATGILGAPRTIRASLQVEL
Sequences:
>Translated_378_residues MTTAATTTFSLDTVDSNQAALNGRFETSSIKHDLFLATNGFLWNRYTPFRRGAITVGSASLSNPSIFSEPNFPDFKDRYR SVYTFQQSVTLGDTIALNERWSILAAVSNSWIETSNYNNAGGVTGGYSASGWSPLGSIMFKPGENVTTYVTYANSLQQGD SAPAGTVNQGEALAPFRSNQYELGAKFDFGRFNLNAALYRIERPYAYTGSDNVFSMKRTQINRGVELMASGAINDEWTVF GGMTFIDPRLHNMGSPQTEGRRILGLSQFVMNCLVEYHVPSVQGLTFTANVNYGTNRPTDYANTSFVPDYAVLNLGMRYA QLIAGKPVTFRFDVFNVTDLHYWANETPAAQNGYNATGSATGILGAPRTIRASLQVEL >Mature_377_residues TTAATTTFSLDTVDSNQAALNGRFETSSIKHDLFLATNGFLWNRYTPFRRGAITVGSASLSNPSIFSEPNFPDFKDRYRS VYTFQQSVTLGDTIALNERWSILAAVSNSWIETSNYNNAGGVTGGYSASGWSPLGSIMFKPGENVTTYVTYANSLQQGDS APAGTVNQGEALAPFRSNQYELGAKFDFGRFNLNAALYRIERPYAYTGSDNVFSMKRTQINRGVELMASGAINDEWTVFG GMTFIDPRLHNMGSPQTEGRRILGLSQFVMNCLVEYHVPSVQGLTFTANVNYGTNRPTDYANTSFVPDYAVLNLGMRYAQ LIAGKPVTFRFDVFNVTDLHYWANETPAAQNGYNATGSATGILGAPRTIRASLQVEL
Specific function: Anguibactin receptor, essential component of the iron uptake system of V.anguillarum [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 41479; Mature: 41347
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAATTTFSLDTVDSNQAALNGRFETSSIKHDLFLATNGFLWNRYTPFRRGAITVGSAS CCCCEEEEEEEECCCCCCCEECCEEECCCCCEEEEEEECCEEECCCCCCCCCEEEECCCC LSNPSIFSEPNFPDFKDRYRSVYTFQQSVTLGDTIALNERWSILAAVSNSWIETSNYNNA CCCCCCCCCCCCCCHHHHHHHEEEEEECEECCCEEEECCCEEEEEEECCCEEECCCCCCC GGVTGGYSASGWSPLGSIMFKPGENVTTYVTYANSLQQGDSAPAGTVNQGEALAPFRSNQ CCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECHHCCCCCCCCCCCCCCCEECCCCCCC YELGAKFDFGRFNLNAALYRIERPYAYTGSDNVFSMKRTQINRGVELMASGAINDEWTVF EEECCEEECCEEECCEEEEEEECCEEECCCCCEEEEHHHHHHCCEEEEECCCCCCCEEEE GGMTFIDPRLHNMGSPQTEGRRILGLSQFVMNCLVEYHVPSVQGLTFTANVNYGTNRPTD CCEEEECHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC YANTSFVPDYAVLNLGMRYAQLIAGKPVTFRFDVFNVTDLHYWANETPAAQNGYNATGSA CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCC TGILGAPRTIRASLQVEL CEECCCCCEEEEEEEEEC >Mature Secondary Structure TTAATTTFSLDTVDSNQAALNGRFETSSIKHDLFLATNGFLWNRYTPFRRGAITVGSAS CCCEEEEEEEECCCCCCCEECCEEECCCCCEEEEEEECCEEECCCCCCCCCEEEECCCC LSNPSIFSEPNFPDFKDRYRSVYTFQQSVTLGDTIALNERWSILAAVSNSWIETSNYNNA CCCCCCCCCCCCCCHHHHHHHEEEEEECEECCCEEEECCCEEEEEEECCCEEECCCCCCC GGVTGGYSASGWSPLGSIMFKPGENVTTYVTYANSLQQGDSAPAGTVNQGEALAPFRSNQ CCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECHHCCCCCCCCCCCCCCCEECCCCCCC YELGAKFDFGRFNLNAALYRIERPYAYTGSDNVFSMKRTQINRGVELMASGAINDEWTVF EEECCEEECCEEECCEEEEEEECCEEECCCCCEEEEHHHHHHCCEEEEECCCCCCCEEEE GGMTFIDPRLHNMGSPQTEGRRILGLSQFVMNCLVEYHVPSVQGLTFTANVNYGTNRPTD CCEEEECHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC YANTSFVPDYAVLNLGMRYAQLIAGKPVTFRFDVFNVTDLHYWANETPAAQNGYNATGSA CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCC TGILGAPRTIRASLQVEL CEECCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2830268; 13129954; 2311935 [H]