Definition Nitrobacter winogradskyi Nb-255, complete genome.
Accession NC_007406
Length 3,402,093

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The map label for this gene is 75674927

Identifier: 75674927

GI number: 75674927

Start: 816327

End: 817706

Strand: Direct

Name: 75674927

Synonym: Nwi_0730

Alternate gene names: NA

Gene position: 816327-817706 (Clockwise)

Preceding gene: 75674926

Following gene: 75674930

Centisome position: 23.99

GC content: 61.16

Gene sequence:

>1380_bases
ATGAACGGCCTTGCACGATCCTACGCCCATATCCGCCAGGGGATCGAACTCGGCTTCTTTCGCGGCAGGCCGCTGATCTA
TGACGGTACCGAGCCGGTCGCCATCGACGCCCAGGCCGGAAAAGGCAAGCTCACACGGTTTCTCGGCGTCAATCTGGTGT
CGCCGCGCACGGCGCATCTGAGCAAGATCATCACCGATCCGAAGGATGCCGAACTTGCATGGGTATCGTGGAAAACGCTT
GAGCGGCAAGGCTATCATGTGCGCTTTATCAATGCGGGCAGGCTCTACGGTTATCCTTCCGAAAGCTATAATTTCAACAC
GCGGCTTCTGGAAATCGCCTCGATCCCAGCGCTGCGAACTCTGGTGGGGGAGGCCGCGTACGATGCCGCGAGCTATCTCG
TGCCAGTCGATCCGAACCCCCATCACAAATGGATCGGCCAGGGCGTGCGCACGGCCTTCGCGCTCTACAACAAGATCACG
GCGCTTTATCCTTCCGAACGTTGGCCCTGCACGGTTGGCGGGCTTTGGGATTTCTTCGGGCGCGCGCCGGATGAGATTGC
GGACGATCTACTGGTGTGGGCGTCTGATTCCCGCATGGAGGAAGACTGGGGCATGTGCCGCCTGGTCGCGGGCCTGACCG
CTTCGACCGATCAATGGAACGCCTATTCCTCGACGGTGGTGGAGCGGCTGCAAGGTTTCCAGCCGGGATCGGCGGCGCGA
ACCGTGACCGAACGCAACAGCTTCGATCCCGCCGACATGAAACGGGAGAAGACGGCTCTCTTTATTATTGGGTCGGCCCG
CTCGGACACGAGCCGGAATTTCGTGGGTGCGATGGCGGCGGCGGTCATCGAGCGTTTCGCGGATGCGCATGGCACGCTGC
GGGCGCTGGTCGTCGGCGAAGAATGGGGGCAACTCTATGTCAGCAACTTCCCTGAAATCCTCACCCTCTACCGGCAGGGC
GGGATCAATTTCCTCGGCGTCTTCCAGAACGCTGCAGCCCAGATCGAAAACCGCTACGGGCGCGAACTGGCCCGCATCTG
GCGCAAGGCGGTCGCGCATACGCTCTATCGGGGCTTGCCAGATACCGAAACGCTCAAAGACATCGAGCACCGCTCGGGCC
GCACCTCGGTCATGGTGCGCGGATTCAACGTCAACCAGAACCAGGTGAACGGCTCCGGCGACAATCTCTCCGAACAATCG
AGGCCGCTGCTCCAGGTGGAAGACATCCGCCTTGCGACCGGCGGTGAAAGCGCGCTGCTCGAATCCCGCGATCAGGGGTA
TTTCACGGTCGATATGCCGAATTTCTGGGAGCGGCCTGAAATGAGCGGGATGCTGCGCGATGTACGCGAGAAGCCCGATA
AATATGCGTGGCTCGCGTAG

Upstream 100 bases:

>100_bases
CCGAGGCCCAGCTTCGCGCCATGCTGGACGCAAACCCCAGCGGCCAGCTCGGCCATTCCAGATTGAACGACGAAAGGGCG
CTGCGTGAGGCGGGACTGCT

Downstream 100 bases:

>100_bases
AATTCTCTTTCTAATGCTTCCCGCACTAAACGTTGGTCGGAACGGGTTGGCCCAGCGGTAGGCGCGGTCGAACGCTTACG
GCCACCTCGACCTCCTGTCC

Product: type IV secretory pathway VirD4 components

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHLSKIITDPKDAELAWVSWKTL
ERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRTLVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKIT
ALYPSERWPCTVGGLWDFFGRAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR
TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGEEWGQLYVSNFPEILTLYRQG
GINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLPDTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQS
RPLLQVEDIRLATGGESALLESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA

Sequences:

>Translated_459_residues
MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHLSKIITDPKDAELAWVSWKTL
ERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRTLVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKIT
ALYPSERWPCTVGGLWDFFGRAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR
TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGEEWGQLYVSNFPEILTLYRQG
GINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLPDTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQS
RPLLQVEDIRLATGGESALLESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA
>Mature_459_residues
MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHLSKIITDPKDAELAWVSWKTL
ERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRTLVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKIT
ALYPSERWPCTVGGLWDFFGRAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR
TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGEEWGQLYVSNFPEILTLYRQG
GINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLPDTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQS
RPLLQVEDIRLATGGESALLESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51426; Mature: 51426

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHL
CCCHHHHHHHHHCCCEEEEECCCCEEECCCCCEEEECCCCCCCEEHHHCCEECCCCHHHH
SKIITDPKDAELAWVSWKTLERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRT
HHHHCCCCCCEEEEEEHHHHHCCCCEEEEEECCEEECCCCCCCCCCCEEEEECCCHHHHH
LVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKITALYPSERWPCTVGGLWDFFG
HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHC
RAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR
CCHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHH
TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGE
HHHHCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
EWGQLYVSNFPEILTLYRQGGINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLP
HHHHHHHHCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQSRPLLQVEDIRLATGGESALL
CHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCEEEEEEEEECCCCHHHH
ESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA
HCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEECCC
>Mature Secondary Structure
MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHL
CCCHHHHHHHHHCCCEEEEECCCCEEECCCCCEEEECCCCCCCEEHHHCCEECCCCHHHH
SKIITDPKDAELAWVSWKTLERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRT
HHHHCCCCCCEEEEEEHHHHHCCCCEEEEEECCEEECCCCCCCCCCCEEEEECCCHHHHH
LVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKITALYPSERWPCTVGGLWDFFG
HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHC
RAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR
CCHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHH
TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGE
HHHHCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
EWGQLYVSNFPEILTLYRQGGINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLP
HHHHHHHHCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQSRPLLQVEDIRLATGGESALL
CHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCEEEEEEEEECCCCHHHH
ESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA
HCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA