| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is cysJ [H]
Identifier: 75674788
GI number: 75674788
Start: 666952
End: 668793
Strand: Direct
Name: cysJ [H]
Synonym: Nwi_0590
Alternate gene names: 75674788
Gene position: 666952-668793 (Clockwise)
Preceding gene: 75674787
Following gene: 75674789
Centisome position: 19.6
GC content: 64.12
Gene sequence:
>1842_bases ATGACAAAATTGGAATTTCCAGGTTCAGCACTCACGACGGATCAGTGGACGCAGGTCAACCAGCTCGCGACGTCTCTCAG TCATGAACAGGCGATCTGGATCAGCGGCTATTTCGCGGGTCTCAGCCATCGGGCCCGGGCTGGCGCTGCGGCCACGGAAA TCGTGGAGCTTGCACCGCCTTCGCAGGTCGGCGCCGACGGCGCTGCTGCGACGCGGCTCCTGACGGTCCTGTTCGCAAGC GAGACCGGAAACAGCAAGACCCTCGCTAAAGCGCTGGTCGAAAAGGCCGCGGCCCAGGGAATCCAGGCGCGTCTCGCCGA TATGGCTGAGTACAAGACGCGCGGCCTCAAGGACGAGCAGGATCTGCTCGTCATCACCAGCACTCACGGCGAGGGCGATG CCCCGCAGACCGCCGTCGGTTTCTTTGAATTTCTGGAGAGCCGCAAGGCTCCCAAGCTGCCGCAACTGCGTTACGCGGTG CTGGCGCTGGGCGATTCGACCTACGAGAAATACTGCGAGGCGGGCAAGCGGGTCGACCGGCGGCTCGAAGAACTGGGGGC GCAACGGCTCGCCGATCGTGTCGACTGCGATGTCGATTACGAGGATGCCGCCGATGCGTGGATCGCATCGGTCGTCACCA AGCTTGCGCCGGCCGCGCAGGCGCCTGCCTCCGCTCCGGGTGCATCGGCGGCGACGATGCGGAGCGGTGCGCCGTCGCCT GCGACATTCGATAAAAAGAATCCGTTTCAGGCCGCGGTCATCGACAATATCGTGCTGACGGGACGCGGATCGACCAAGGA AACGCGCCATATCGAGTTGTCGCTGGCGGATTCGGGTTTGACCTATCAGCCCGGCGATGCGCTCGGCGTGGTGCCGCGTA ACGATCCGGCGCTGGTGGAAGCCATACTTGAGAAACTGTCGCTGTCCGCCGACGCTCCTGTCACGGTGAAGCAGGGTACG ATAAGCCTTGGTGAGGCGCTGAGCGGCACATTCGAGATCACGGCGCTCACGCCGCGCTTTCTGGATCTTTGGTCCGAACT CACGGGCTCCGATGAACTGCAGGCGTTGCGCGCGCCCGATCAGAAGGAGGCGCGCGCGGCCTTCCAGCACAACTATCACA TTCTGGATGTCATCGGCCGTTTTCCGGCCCCCGGCATCGATGCCGCGCGGCTCGTCGCGGGTCTCAGGCCGTTGCAGCCG CGGCTTTATTCGATCGCTTCGAGCCTTGCCGCCGCCCCGGACGAGGCGCATCTTACGGTCAGCACGGTGCGCTATACGCT GCACGACCTGCCGCGCACCGGCGTCGCATCCGGCTATCTTGCCGCGCGTACCGAGGCGGACGCCACGGTTCCGGTCTACA TCCAGTCCAACGATCACTTCCATCTGCCGGATGACGATGTGCCGATCCTGATGATCGGCGCGGGCACCGGCGTCGCGCCG TATCGTGCTTTCATGCAGGAGCGTGAAGCCAGCGGCGCATCCGGCCGGTCATGGCTGTTTTTCGGCGAACGCAATTTCCG CAGCGACTTCCTCTATCAGGTCGAGTGGCAGGAACTGCTCAAGAATGGCGTGCTGAGCCGGCTCGATCTGGCGTTCTCGC GGGATGCCGCGCCCAAGACCTATGTGCAGGATCGCCTGCGCCGCCAGGGCCGTGATGTTTACGCATGGCTCGAGGAAGGC GCGTATGTCTACGTCTGCGGCGACAGCGCCCACATGGCGCCTGACGTTCACGCGGCGTTGACCGAGATCGTCGCCGAACA TGGCGGCCTCGATCGCGAGGAGGCGGGCGCCTATCTCTCGGCGCTGCAGCGTGATCGCCGTTATCGGCTCGACGTTTATT GA
Upstream 100 bases:
>100_bases AAACGGATGCAGAGGCTTTCCATTTCGTGCGGCGTCTCGACCAGACCTGTGAAGTGTCAATCGCGGCGGCCGGCAGTTCG CTCCCGAGGTTTTGCTTGCG
Downstream 100 bases:
>100_bases GGCCAGTTTGGTGGACGCAAAGACACAACCCGATCGCAGCCGCGATGTCTCCCAGCCGCTCGACAAGCTCGGACCGGATG AAACGCTGAAGGCCAACAGC
Product: sulphite reductase (NADPH) flavoprotein, alpha chain
Products: NA
Alternate protein names: SiR-FP [H]
Number of amino acids: Translated: 613; Mature: 612
Protein sequence:
>613_residues MTKLEFPGSALTTDQWTQVNQLATSLSHEQAIWISGYFAGLSHRARAGAAATEIVELAPPSQVGADGAAATRLLTVLFAS ETGNSKTLAKALVEKAAAQGIQARLADMAEYKTRGLKDEQDLLVITSTHGEGDAPQTAVGFFEFLESRKAPKLPQLRYAV LALGDSTYEKYCEAGKRVDRRLEELGAQRLADRVDCDVDYEDAADAWIASVVTKLAPAAQAPASAPGASAATMRSGAPSP ATFDKKNPFQAAVIDNIVLTGRGSTKETRHIELSLADSGLTYQPGDALGVVPRNDPALVEAILEKLSLSADAPVTVKQGT ISLGEALSGTFEITALTPRFLDLWSELTGSDELQALRAPDQKEARAAFQHNYHILDVIGRFPAPGIDAARLVAGLRPLQP RLYSIASSLAAAPDEAHLTVSTVRYTLHDLPRTGVASGYLAARTEADATVPVYIQSNDHFHLPDDDVPILMIGAGTGVAP YRAFMQEREASGASGRSWLFFGERNFRSDFLYQVEWQELLKNGVLSRLDLAFSRDAAPKTYVQDRLRRQGRDVYAWLEEG AYVYVCGDSAHMAPDVHAALTEIVAEHGGLDREEAGAYLSALQRDRRYRLDVY
Sequences:
>Translated_613_residues MTKLEFPGSALTTDQWTQVNQLATSLSHEQAIWISGYFAGLSHRARAGAAATEIVELAPPSQVGADGAAATRLLTVLFAS ETGNSKTLAKALVEKAAAQGIQARLADMAEYKTRGLKDEQDLLVITSTHGEGDAPQTAVGFFEFLESRKAPKLPQLRYAV LALGDSTYEKYCEAGKRVDRRLEELGAQRLADRVDCDVDYEDAADAWIASVVTKLAPAAQAPASAPGASAATMRSGAPSP ATFDKKNPFQAAVIDNIVLTGRGSTKETRHIELSLADSGLTYQPGDALGVVPRNDPALVEAILEKLSLSADAPVTVKQGT ISLGEALSGTFEITALTPRFLDLWSELTGSDELQALRAPDQKEARAAFQHNYHILDVIGRFPAPGIDAARLVAGLRPLQP RLYSIASSLAAAPDEAHLTVSTVRYTLHDLPRTGVASGYLAARTEADATVPVYIQSNDHFHLPDDDVPILMIGAGTGVAP YRAFMQEREASGASGRSWLFFGERNFRSDFLYQVEWQELLKNGVLSRLDLAFSRDAAPKTYVQDRLRRQGRDVYAWLEEG AYVYVCGDSAHMAPDVHAALTEIVAEHGGLDREEAGAYLSALQRDRRYRLDVY >Mature_612_residues TKLEFPGSALTTDQWTQVNQLATSLSHEQAIWISGYFAGLSHRARAGAAATEIVELAPPSQVGADGAAATRLLTVLFASE TGNSKTLAKALVEKAAAQGIQARLADMAEYKTRGLKDEQDLLVITSTHGEGDAPQTAVGFFEFLESRKAPKLPQLRYAVL ALGDSTYEKYCEAGKRVDRRLEELGAQRLADRVDCDVDYEDAADAWIASVVTKLAPAAQAPASAPGASAATMRSGAPSPA TFDKKNPFQAAVIDNIVLTGRGSTKETRHIELSLADSGLTYQPGDALGVVPRNDPALVEAILEKLSLSADAPVTVKQGTI SLGEALSGTFEITALTPRFLDLWSELTGSDELQALRAPDQKEARAAFQHNYHILDVIGRFPAPGIDAARLVAGLRPLQPR LYSIASSLAAAPDEAHLTVSTVRYTLHDLPRTGVASGYLAARTEADATVPVYIQSNDHFHLPDDDVPILMIGAGTGVAPY RAFMQEREASGASGRSWLFFGERNFRSDFLYQVEWQELLKNGVLSRLDLAFSRDAAPKTYVQDRLRRQGRDVYAWLEEGA YVYVCGDSAHMAPDVHAALTEIVAEHGGLDREEAGAYLSALQRDRRYRLDVY
Specific function: Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow f
COG id: COG0369
COG function: function code P; Sulfite reductase, alpha subunit (flavoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 flavodoxin-like domain [H]
Homologues:
Organism=Homo sapiens, GI7657393, Length=593, Percent_Identity=31.1973018549747, Blast_Score=236, Evalue=4e-62, Organism=Homo sapiens, GI127139033, Length=606, Percent_Identity=30.3630363036304, Blast_Score=235, Evalue=8e-62, Organism=Homo sapiens, GI221316705, Length=602, Percent_Identity=30.8970099667774, Blast_Score=232, Evalue=7e-61, Organism=Homo sapiens, GI24041029, Length=599, Percent_Identity=32.0534223706177, Blast_Score=231, Evalue=2e-60, Organism=Homo sapiens, GI221316709, Length=593, Percent_Identity=31.0286677908938, Blast_Score=228, Evalue=2e-59, Organism=Homo sapiens, GI10835173, Length=658, Percent_Identity=30.6990881458967, Blast_Score=213, Evalue=5e-55, Organism=Homo sapiens, GI221316707, Length=519, Percent_Identity=30.2504816955684, Blast_Score=194, Evalue=2e-49, Organism=Homo sapiens, GI40254422, Length=643, Percent_Identity=29.8600311041991, Blast_Score=194, Evalue=2e-49, Organism=Homo sapiens, GI169790956, Length=503, Percent_Identity=28.8270377733598, Blast_Score=187, Evalue=3e-47, Organism=Homo sapiens, GI169790958, Length=503, Percent_Identity=28.8270377733598, Blast_Score=186, Evalue=4e-47, Organism=Escherichia coli, GI1789123, Length=607, Percent_Identity=44.9752883031301, Blast_Score=503, Evalue=1e-143, Organism=Escherichia coli, GI1789154, Length=147, Percent_Identity=30.6122448979592, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17554134, Length=598, Percent_Identity=30.1003344481605, Blast_Score=220, Evalue=2e-57, Organism=Caenorhabditis elegans, GI17566446, Length=587, Percent_Identity=27.93867120954, Blast_Score=155, Evalue=7e-38, Organism=Caenorhabditis elegans, GI17531441, Length=146, Percent_Identity=34.9315068493151, Blast_Score=82, Evalue=7e-16, Organism=Caenorhabditis elegans, GI32563863, Length=125, Percent_Identity=36, Blast_Score=79, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6321832, Length=641, Percent_Identity=28.0811232449298, Blast_Score=174, Evalue=4e-44, Organism=Saccharomyces cerevisiae, GI6325305, Length=629, Percent_Identity=22.4165341812401, Blast_Score=132, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6321143, Length=391, Percent_Identity=28.6445012787724, Blast_Score=130, Evalue=8e-31, Organism=Saccharomyces cerevisiae, GI6322597, Length=124, Percent_Identity=34.6774193548387, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI17137192, Length=609, Percent_Identity=31.1986863711002, Blast_Score=228, Evalue=7e-60, Organism=Drosophila melanogaster, GI24582192, Length=518, Percent_Identity=31.6602316602317, Blast_Score=199, Evalue=6e-51, Organism=Drosophila melanogaster, GI78706872, Length=663, Percent_Identity=29.5625942684766, Blast_Score=196, Evalue=4e-50, Organism=Drosophila melanogaster, GI24583543, Length=663, Percent_Identity=29.7134238310709, Blast_Score=195, Evalue=7e-50, Organism=Drosophila melanogaster, GI78706876, Length=663, Percent_Identity=29.7134238310709, Blast_Score=195, Evalue=7e-50, Organism=Drosophila melanogaster, GI24660907, Length=600, Percent_Identity=26, Blast_Score=151, Evalue=1e-36, Organism=Drosophila melanogaster, GI24660903, Length=600, Percent_Identity=26, Blast_Score=151, Evalue=1e-36, Organism=Drosophila melanogaster, GI24647438, Length=418, Percent_Identity=27.7511961722488, Blast_Score=102, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010199 - InterPro: IPR003097 - InterPro: IPR017927 - InterPro: IPR001094 - InterPro: IPR008254 - InterPro: IPR001709 - InterPro: IPR023173 - InterPro: IPR001433 - InterPro: IPR017938 [H]
Pfam domain/function: PF00667 FAD_binding_1; PF00258 Flavodoxin_1; PF00175 NAD_binding_1 [H]
EC number: =1.8.1.2 [H]
Molecular weight: Translated: 66301; Mature: 66170
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS50902 FLAVODOXIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLEFPGSALTTDQWTQVNQLATSLSHEQAIWISGYFAGLSHRARAGAAATEIVELAPP CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHCCCC SQVGADGAAATRLLTVLFASETGNSKTLAKALVEKAAAQGIQARLADMAEYKTRGLKDEQ CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DLLVITSTHGEGDAPQTAVGFFEFLESRKAPKLPQLRYAVLALGDSTYEKYCEAGKRVDR CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEEEECCHHHHHHHHHHHHHHH RLEELGAQRLADRVDCDVDYEDAADAWIASVVTKLAPAAQAPASAPGASAATMRSGAPSP HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHCCCCCCC ATFDKKNPFQAAVIDNIVLTGRGSTKETRHIELSLADSGLTYQPGDALGVVPRNDPALVE CCCCCCCCCHHHHHCCEEEECCCCCCCCEEEEEEEECCCCEECCCCEEEECCCCCHHHHH AILEKLSLSADAPVTVKQGTISLGEALSGTFEITALTPRFLDLWSELTGSDELQALRAPD HHHHHHCCCCCCCEEEECCCCHHHHHCCCCEEEEEECHHHHHHHHHHCCCHHHHHHCCCC QKEARAAFQHNYHILDVIGRFPAPGIDAARLVAGLRPLQPRLYSIASSLAAAPDEAHLTV HHHHHHHHHCCCCCEEHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEH STVRYTLHDLPRTGVASGYLAARTEADATVPVYIQSNDHFHLPDDDVPILMIGAGTGVAP HHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCEEECCCCCCCEEEEECCCCCHH YRAFMQEREASGASGRSWLFFGERNFRSDFLYQVEWQELLKNGVLSRLDLAFSRDAAPKT HHHHHHHHHCCCCCCCEEEEECCCCCCCHHEEEEHHHHHHHHCHHHHHHHHHCCCCCCHH YVQDRLRRQGRDVYAWLEEGAYVYVCGDSAHMAPDVHAALTEIVAEHGGLDREEAGAYLS HHHHHHHHCCCCEEEHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH ALQRDRRYRLDVY HHHHCCCEECCCC >Mature Secondary Structure TKLEFPGSALTTDQWTQVNQLATSLSHEQAIWISGYFAGLSHRARAGAAATEIVELAPP CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHCCCC SQVGADGAAATRLLTVLFASETGNSKTLAKALVEKAAAQGIQARLADMAEYKTRGLKDEQ CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DLLVITSTHGEGDAPQTAVGFFEFLESRKAPKLPQLRYAVLALGDSTYEKYCEAGKRVDR CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEEEECCHHHHHHHHHHHHHHH RLEELGAQRLADRVDCDVDYEDAADAWIASVVTKLAPAAQAPASAPGASAATMRSGAPSP HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHCCCCCCC ATFDKKNPFQAAVIDNIVLTGRGSTKETRHIELSLADSGLTYQPGDALGVVPRNDPALVE CCCCCCCCCHHHHHCCEEEECCCCCCCCEEEEEEEECCCCEECCCCEEEECCCCCHHHHH AILEKLSLSADAPVTVKQGTISLGEALSGTFEITALTPRFLDLWSELTGSDELQALRAPD HHHHHHCCCCCCCEEEECCCCHHHHHCCCCEEEEEECHHHHHHHHHHCCCHHHHHHCCCC QKEARAAFQHNYHILDVIGRFPAPGIDAARLVAGLRPLQPRLYSIASSLAAAPDEAHLTV HHHHHHHHHCCCCCEEHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEH STVRYTLHDLPRTGVASGYLAARTEADATVPVYIQSNDHFHLPDDDVPILMIGAGTGVAP HHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCEEECCCCCCCEEEEECCCCCHH YRAFMQEREASGASGRSWLFFGERNFRSDFLYQVEWQELLKNGVLSRLDLAFSRDAAPKT HHHHHHHHHCCCCCCCEEEEECCCCCCCHHEEEEHHHHHHHHCHHHHHHHHHCCCCCCHH YVQDRLRRQGRDVYAWLEEGAYVYVCGDSAHMAPDVHAALTEIVAEHGGLDREEAGAYLS HHHHHHHHCCCCEEEHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH ALQRDRRYRLDVY HHHHCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]