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The map label for this gene is yhjC [H]

Identifier: 75674686

GI number: 75674686

Start: 542539

End: 543468

Strand: Direct

Name: yhjC [H]

Synonym: Nwi_0488

Alternate gene names: 75674686

Gene position: 542539-543468 (Clockwise)

Preceding gene: 75674684

Following gene: 75674690

Centisome position: 15.95

GC content: 60.0

Gene sequence:

>930_bases
ATGGATCGGATCGATCTGTTCAGGGTCTTTGTACGTGTCGTGGAACTGGCGAGTTTCACGCGCGCAGCGGATGCGCTGGT
GTTGCCGCGTTCGTCCGTATCCGCGGCGGTTCGAGAGCTTGAATCGCGTGTCGGCGCGCGGTTGCTCCACCGCACCACCC
GCAAGGTAGTGCCGACGCCGGATGGTACGGCTTTTTACAAACGATGCTTGCGGCTGCTCGCCGATGTCGAAGAGACAGAG
GCGCTATTCCGCCAGAGTGCGCGTCGTCCTGTCGGTAAGCTGAAGGTGGACGTCCCCGGCCGTCTCGGGCGGCTGATCAT
CGTGCCGGCGCTTCCGGACTTTTTCGCCCGCTATCCCGACATCGAGCTTGATCTCGGCGTCACGGACAGAGCGGTCAACC
TTGTCGAGCAAAGTGTCGACGGCGTTCTGCGGGTGGGTGTCCTGAGCCAGTCCGGTTTGATTGCGCGTTCAGTCGGTGTG
TTGCCGCTCATCAATGTGGCGGCTCCGTCCTACCTTGGCCGTCATGGCATTCCGGAGACGCCCGACGATCTCGATACGCA
TCTCGCTGTTAGATATGCGTCGCCGTCCACCGGCCGTATCGAAGATTGGGAATGGATCGATAACGGTCATGTTCGTACCA
GAGTGGTGGCGGGCCGAATCACGGTCAACAGCGCCGAAGCTTATATTGCCTGTGCGTTGGCCGGATTGGGTATGATCCAG
ATACCCGCCTATGACGTGAAGCCGCATCTCGCTGCGGGCGAACTGGTTGAGATTCTACCGCATCATCGCGCGCAGCCTTT
TCCCATGACGTTTCTCTATCCGTCGCGGCAGCACCGGTCGCGGCGGGTGCAGGTGTTTGCTGATTGGCTCGAAAACCTGC
TTCGCGAGAGAGTCCTACATTTGGATCCCACGCAAGCCTTGTCTGTTTGA

Upstream 100 bases:

>100_bases
GCTCCCGGTTTTCAGGGTCAGACAGTAACCTATCGTGCTGATATTCCGGCATAACCGGCTATATTCTGGTTTCATATGTC
ATAATCTGCGAACAATTGAC

Downstream 100 bases:

>100_bases
TTGGGGCATGGACTGTCCGATAACCGCTGCATGCCCGCTCTCATCCCGCTAGAGCGGGATGAGGAAAAGTGTGTAGCGGT
TTTCCACTTCGCTCGAAAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDRIDLFRVFVRVVELASFTRAADALVLPRSSVSAAVRELESRVGARLLHRTTRKVVPTPDGTAFYKRCLRLLADVEETE
ALFRQSARRPVGKLKVDVPGRLGRLIIVPALPDFFARYPDIELDLGVTDRAVNLVEQSVDGVLRVGVLSQSGLIARSVGV
LPLINVAAPSYLGRHGIPETPDDLDTHLAVRYASPSTGRIEDWEWIDNGHVRTRVVAGRITVNSAEAYIACALAGLGMIQ
IPAYDVKPHLAAGELVEILPHHRAQPFPMTFLYPSRQHRSRRVQVFADWLENLLRERVLHLDPTQALSV

Sequences:

>Translated_309_residues
MDRIDLFRVFVRVVELASFTRAADALVLPRSSVSAAVRELESRVGARLLHRTTRKVVPTPDGTAFYKRCLRLLADVEETE
ALFRQSARRPVGKLKVDVPGRLGRLIIVPALPDFFARYPDIELDLGVTDRAVNLVEQSVDGVLRVGVLSQSGLIARSVGV
LPLINVAAPSYLGRHGIPETPDDLDTHLAVRYASPSTGRIEDWEWIDNGHVRTRVVAGRITVNSAEAYIACALAGLGMIQ
IPAYDVKPHLAAGELVEILPHHRAQPFPMTFLYPSRQHRSRRVQVFADWLENLLRERVLHLDPTQALSV
>Mature_309_residues
MDRIDLFRVFVRVVELASFTRAADALVLPRSSVSAAVRELESRVGARLLHRTTRKVVPTPDGTAFYKRCLRLLADVEETE
ALFRQSARRPVGKLKVDVPGRLGRLIIVPALPDFFARYPDIELDLGVTDRAVNLVEQSVDGVLRVGVLSQSGLIARSVGV
LPLINVAAPSYLGRHGIPETPDDLDTHLAVRYASPSTGRIEDWEWIDNGHVRTRVVAGRITVNSAEAYIACALAGLGMIQ
IPAYDVKPHLAAGELVEILPHHRAQPFPMTFLYPSRQHRSRRVQVFADWLENLLRERVLHLDPTQALSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=305, Percent_Identity=40.655737704918, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=30.6397306397306, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=32.8719723183391, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=29.5774647887324, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=28.2229965156794, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=27.7966101694915, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=30.1369863013699, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=259, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788481, Length=123, Percent_Identity=30.0813008130081, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=22.7118644067797, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788748, Length=133, Percent_Identity=35.3383458646617, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34346; Mature: 34346

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDLFRVFVRVVELASFTRAADALVLPRSSVSAAVRELESRVGARLLHRTTRKVVPTP
CCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGTAFYKRCLRLLADVEETEALFRQSARRPVGKLKVDVPGRLGRLIIVPALPDFFARYPD
CCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCHHHHHHCCC
IELDLGVTDRAVNLVEQSVDGVLRVGVLSQSGLIARSVGVLPLINVAAPSYLGRHGIPET
CEEECCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHCCCHHHHHHHCCHHHHCCCCCCC
PDDLDTHLAVRYASPSTGRIEDWEWIDNGHVRTRVVAGRITVNSAEAYIACALAGLGMIQ
CCCCCCEEEEEECCCCCCCCCCCEECCCCCEEEEEEEEEEEECCCHHHHHHHHHCCCEEE
IPAYDVKPHLAAGELVEILPHHRAQPFPMTFLYPSRQHRSRRVQVFADWLENLLRERVLH
ECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC
LDPTQALSV
CCCHHHHCC
>Mature Secondary Structure
MDRIDLFRVFVRVVELASFTRAADALVLPRSSVSAAVRELESRVGARLLHRTTRKVVPTP
CCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGTAFYKRCLRLLADVEETEALFRQSARRPVGKLKVDVPGRLGRLIIVPALPDFFARYPD
CCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCHHHHHHCCC
IELDLGVTDRAVNLVEQSVDGVLRVGVLSQSGLIARSVGVLPLINVAAPSYLGRHGIPET
CEEECCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHCCCHHHHHHHCCHHHHCCCCCCC
PDDLDTHLAVRYASPSTGRIEDWEWIDNGHVRTRVVAGRITVNSAEAYIACALAGLGMIQ
CCCCCCEEEEEECCCCCCCCCCCEECCCCCEEEEEEEEEEEECCCHHHHHHHHHCCCEEE
IPAYDVKPHLAAGELVEILPHHRAQPFPMTFLYPSRQHRSRRVQVFADWLENLLRERVLH
ECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC
LDPTQALSV
CCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]