| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
Click here to switch to the map view.
The map label for this gene is folD [H]
Identifier: 75674678
GI number: 75674678
Start: 536741
End: 537625
Strand: Direct
Name: folD [H]
Synonym: Nwi_0480
Alternate gene names: 75674678
Gene position: 536741-537625 (Clockwise)
Preceding gene: 75674677
Following gene: 75674679
Centisome position: 15.78
GC content: 67.01
Gene sequence:
>885_bases ATGGCGGCCAGTATCATCGATGGAAAAGTCATCGCCGCCGATTTGCGCGCGCGGGTGGCCGGTGAGGTGACGCGGATCAA GCGTGATCACGGGTTGACGCCGGGCCTCGCCGTGGTGCTGGTCGGCAACGATCCGGCGAGCGAAGTCTACGTCCGCAACA AGCATAAGCAGACCCAGGCCGCCGGCATGGCGTCGTTCGAGCACATGCTGCCCGCGGATGTCGCCCAGGCCGATGTGCTG GCCCTGATCGCTGAACTGAATGCGGATCCCGCCGTTCACGGCATTCTGGTTCAACTGCCGCTGCCGAAGGGACTCGACAC CGAGGCGATCATCGCCGCCATCGATCCGGCCAAGGATGTCGACGGGCTGCATCCCCACAACGCCGGCCGCCTGGCAGGCG GCCTGTCGGCCCTGTCGCCATGCACGCCGCTTGGCTGCATTATTCTGACCAAAAGCGTGCATGCCTCGCTCGAAGGTCTG GACGCCATCGTGATCGGACGCTCCAATCTCGTGGGCCGGCCGCTGGTGCAGTTGCTGCTCAATGAAAACGCCACGGTGAC GATCGCGCATTCGCGCTCGCGCAACCTGCCCGAACTCTGTCGCCGCGCCGATCTGGTCTATGCGGCGGTCGGCAGGGCTG AAATGGTGCGCGGCGACTGGCTCAAGCCGGGCGCGACGGTGATCGATGTCGGCATCACGCGCGTGCCGGCGGCCGAGGGT AAAACCCGGTTGATCGGCGACGTGGCGTTCGATGAGGCGATGCAGGTCGCGGGGGCTGTGACGCCGGTACCCGGCGGCGT CGGGCAGATGACCGTGGCTTGCCTGCTGGTCAACACGCTGCGCGCGGCCTGCGCGATCGAGGGGCTGTCCGCGCCGGGGG TGTAG
Upstream 100 bases:
>100_bases GCTGAAGCAGGTCGCGGTCGAGGGCGATCCGGTCCAGCTCGGCAACGCCCTGCGCGCATTGACGGCGGTTCAACCGAAAT AGCCTGAACTGGGGATCAGC
Downstream 100 bases:
>100_bases GCAGCTTTTGACGAAAGGCTCCGTATGCCGACCTCGGCGTACAACGATACTGGTGCGGCTATAGCGTTTTCGAGCGAAGG GCACCGGTTCGCGTGAAGAA
Product: bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
Products: NA
Alternate protein names: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase [H]
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MAASIIDGKVIAADLRARVAGEVTRIKRDHGLTPGLAVVLVGNDPASEVYVRNKHKQTQAAGMASFEHMLPADVAQADVL ALIAELNADPAVHGILVQLPLPKGLDTEAIIAAIDPAKDVDGLHPHNAGRLAGGLSALSPCTPLGCIILTKSVHASLEGL DAIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRNLPELCRRADLVYAAVGRAEMVRGDWLKPGATVIDVGITRVPAAEG KTRLIGDVAFDEAMQVAGAVTPVPGGVGQMTVACLLVNTLRAACAIEGLSAPGV
Sequences:
>Translated_294_residues MAASIIDGKVIAADLRARVAGEVTRIKRDHGLTPGLAVVLVGNDPASEVYVRNKHKQTQAAGMASFEHMLPADVAQADVL ALIAELNADPAVHGILVQLPLPKGLDTEAIIAAIDPAKDVDGLHPHNAGRLAGGLSALSPCTPLGCIILTKSVHASLEGL DAIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRNLPELCRRADLVYAAVGRAEMVRGDWLKPGATVIDVGITRVPAAEG KTRLIGDVAFDEAMQVAGAVTPVPGGVGQMTVACLLVNTLRAACAIEGLSAPGV >Mature_293_residues AASIIDGKVIAADLRARVAGEVTRIKRDHGLTPGLAVVLVGNDPASEVYVRNKHKQTQAAGMASFEHMLPADVAQADVLA LIAELNADPAVHGILVQLPLPKGLDTEAIIAAIDPAKDVDGLHPHNAGRLAGGLSALSPCTPLGCIILTKSVHASLEGLD AIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRNLPELCRRADLVYAAVGRAEMVRGDWLKPGATVIDVGITRVPAAEGK TRLIGDVAFDEAMQVAGAVTPVPGGVGQMTVACLLVNTLRAACAIEGLSAPGV
Specific function: Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate [H]
COG id: COG0190
COG function: function code H; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family [H]
Homologues:
Organism=Homo sapiens, GI222136639, Length=298, Percent_Identity=44.2953020134228, Blast_Score=237, Evalue=1e-62, Organism=Homo sapiens, GI222418558, Length=295, Percent_Identity=41.3559322033898, Blast_Score=185, Evalue=5e-47, Organism=Homo sapiens, GI94721354, Length=295, Percent_Identity=40, Blast_Score=176, Evalue=3e-44, Organism=Homo sapiens, GI36796743, Length=206, Percent_Identity=25.7281553398058, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1786741, Length=283, Percent_Identity=48.0565371024735, Blast_Score=246, Evalue=9e-67, Organism=Caenorhabditis elegans, GI17568735, Length=291, Percent_Identity=40.893470790378, Blast_Score=200, Evalue=9e-52, Organism=Saccharomyces cerevisiae, GI6319558, Length=284, Percent_Identity=44.7183098591549, Blast_Score=249, Evalue=3e-67, Organism=Saccharomyces cerevisiae, GI6321643, Length=298, Percent_Identity=42.9530201342282, Blast_Score=227, Evalue=2e-60, Organism=Saccharomyces cerevisiae, GI6322933, Length=312, Percent_Identity=28.2051282051282, Blast_Score=81, Evalue=2e-16, Organism=Drosophila melanogaster, GI62472483, Length=287, Percent_Identity=46.3414634146341, Blast_Score=240, Evalue=7e-64, Organism=Drosophila melanogaster, GI45551871, Length=287, Percent_Identity=46.3414634146341, Blast_Score=240, Evalue=7e-64, Organism=Drosophila melanogaster, GI24645718, Length=287, Percent_Identity=46.6898954703833, Blast_Score=239, Evalue=1e-63, Organism=Drosophila melanogaster, GI17137370, Length=287, Percent_Identity=46.6898954703833, Blast_Score=239, Evalue=1e-63, Organism=Drosophila melanogaster, GI17136818, Length=292, Percent_Identity=45.2054794520548, Blast_Score=223, Evalue=8e-59, Organism=Drosophila melanogaster, GI17136816, Length=292, Percent_Identity=45.2054794520548, Blast_Score=223, Evalue=8e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000672 - InterPro: IPR020630 - InterPro: IPR020867 - InterPro: IPR020631 [H]
Pfam domain/function: PF00763 THF_DHG_CYH; PF02882 THF_DHG_CYH_C [H]
EC number: =1.5.1.5; =3.5.4.9 [H]
Molecular weight: Translated: 30341; Mature: 30209
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS00766 THF_DHG_CYH_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASIIDGKVIAADLRARVAGEVTRIKRDHGLTPGLAVVLVGNDPASEVYVRNKHKQTQA CCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHEEECCCHHHHH AGMASFEHMLPADVAQADVLALIAELNADPAVHGILVQLPLPKGLDTEAIIAAIDPAKDV HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCC DGLHPHNAGRLAGGLSALSPCTPLGCIILTKSVHASLEGLDAIVIGRSNLVGRPLVQLLL CCCCCCCCCHHHCCHHHCCCCCCCCCEEEEHHHHHHHCCCEEEEEECCCCCHHHHHHHHH NENATVTIAHSRSRNLPELCRRADLVYAAVGRAEMVRGDWLKPGATVIDVGITRVPAAEG CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEECCEECCCCCC KTRLIGDVAFDEAMQVAGAVTPVPGGVGQMTVACLLVNTLRAACAIEGLSAPGV CCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AASIIDGKVIAADLRARVAGEVTRIKRDHGLTPGLAVVLVGNDPASEVYVRNKHKQTQA CCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHEEECCCHHHHH AGMASFEHMLPADVAQADVLALIAELNADPAVHGILVQLPLPKGLDTEAIIAAIDPAKDV HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCC DGLHPHNAGRLAGGLSALSPCTPLGCIILTKSVHASLEGLDAIVIGRSNLVGRPLVQLLL CCCCCCCCCHHHCCHHHCCCCCCCCCEEEEHHHHHHHCCCEEEEEECCCCCHHHHHHHHH NENATVTIAHSRSRNLPELCRRADLVYAAVGRAEMVRGDWLKPGATVIDVGITRVPAAEG CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEECCEECCCCCC KTRLIGDVAFDEAMQVAGAVTPVPGGVGQMTVACLLVNTLRAACAIEGLSAPGV CCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA