| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is yibQ [C]
Identifier: 75674648
GI number: 75674648
Start: 506762
End: 507964
Strand: Direct
Name: yibQ [C]
Synonym: Nwi_0450
Alternate gene names: 75674648
Gene position: 506762-507964 (Clockwise)
Preceding gene: 75674647
Following gene: 75674649
Centisome position: 14.9
GC content: 62.59
Gene sequence:
>1203_bases ATGACCGATACGACGGACGATCTCAGCACGCCGCTGGGACAGAACCCCGCGCCCAGGCGCCGCTTACGGCTTCCTTTCTC GCTGCCTCAGGCCACGGGATTGTTGTTGGGATCGATCCTCGTCGTCTTCCTGGGTTTTGTTTTCTTCAATCACGATCCTC TCGGCGGTGAACCCAAGGCGCGGGTGGCGATCCGGCAAGCCCCGGTCAGCGACGACAAGCCCACGGCCATCCGGCCGCCA CCGCAACAGCCGGACAGCGCCGCCGTCACCGCTCCATCTGCCAACGGACAGAAGACCATCACCATCATCGACGGATCCAG CGGATCGCGTCAGGACGTCGTGGTTTCCGGTCCAGGTCCTGATGCTGCCGACGCCGGATCAGCGAAGGCGGTAGTGGGGG TCGATCAGCGTCTGTTGGAGAAGTCGCGTCATGGAATGATTCCCGTTGCCGCCGCCGACGGGCTGAAACCTTTCAAGGCT TATGCGGCGGGTACCGAGGCGGATCGCGCGAAGGCTGCGAAGATGCCGGTGGTCGCCATCGTGGTCGGCGGTCTCGGCGT CGGTGCGACGAAAACCACCGATGCGATCATGAAACTGCCGCCAGCCGTGACGCTCGCGTTTACACCCTATGGCTCCGATC CGGGCAGACTGGTGGCGCAGGCGCGCGCGCAGCGCCACGAAGTGCTGTTGCAGGTCCCTATGGAGCCTTATGATTATCCC GACAACGATCCCGGACCGCAGACCCTGCTGACGACACTTGGCGCGGAGCAGAATATCGATCGCCTGCACTGGCAACTGAG CCGCTTTCAAGGCTATGTCGGTTTGACCAATTTCATGGGCGCGCGTTTTGTCGCCGCGGCTGCGGTCATGCAGCCATTCA TGCACGAGGCGGCCAGGCGCGGTCTCGGATATCTCGACGACGGCGCTGCGCCTCTGAGCGTCGCGGGTCGGCTTGCGGAA GGGCAGGCCATGCCGTTCGCCAGGGCCGACCTTATTGTTGACGCCGTTCCGACCTCGGTGGAGATCGACAAGGCGCTCGC AAGGCTTGAAGACTTGGCCATGAAACGAGGCGTCGCCATAGGCATGACATCGGCGCTTCCGGTATCCGTCGACCGAATTG GCGTCTGGATCAAGAGTCTCGAAAGCCGTGGCGTGATGCTTGTGCCGTTGACAACCGCGATGCTGAAATCAAAATCGACC TAA
Upstream 100 bases:
>100_bases GGTTCGTTTGCGTGCCGGTTACTGCAAGTCGCCTGATCTCGCATTGCCGCATTTTGAAAGCGCCCATGGTATCCTCGATT GGGGATGATTCGAGGGGGCC
Downstream 100 bases:
>100_bases AGCTCCAGATTGGTTGCACGCGTTTTCTTCACACCGACCGGTATCCAATTCGCTTGAAAACGCTATAAGATCAGCATTCG TATCCGTCCCGTTCTCAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MTDTTDDLSTPLGQNPAPRRRLRLPFSLPQATGLLLGSILVVFLGFVFFNHDPLGGEPKARVAIRQAPVSDDKPTAIRPP PQQPDSAAVTAPSANGQKTITIIDGSSGSRQDVVVSGPGPDAADAGSAKAVVGVDQRLLEKSRHGMIPVAAADGLKPFKA YAAGTEADRAKAAKMPVVAIVVGGLGVGATKTTDAIMKLPPAVTLAFTPYGSDPGRLVAQARAQRHEVLLQVPMEPYDYP DNDPGPQTLLTTLGAEQNIDRLHWQLSRFQGYVGLTNFMGARFVAAAAVMQPFMHEAARRGLGYLDDGAAPLSVAGRLAE GQAMPFARADLIVDAVPTSVEIDKALARLEDLAMKRGVAIGMTSALPVSVDRIGVWIKSLESRGVMLVPLTTAMLKSKST
Sequences:
>Translated_400_residues MTDTTDDLSTPLGQNPAPRRRLRLPFSLPQATGLLLGSILVVFLGFVFFNHDPLGGEPKARVAIRQAPVSDDKPTAIRPP PQQPDSAAVTAPSANGQKTITIIDGSSGSRQDVVVSGPGPDAADAGSAKAVVGVDQRLLEKSRHGMIPVAAADGLKPFKA YAAGTEADRAKAAKMPVVAIVVGGLGVGATKTTDAIMKLPPAVTLAFTPYGSDPGRLVAQARAQRHEVLLQVPMEPYDYP DNDPGPQTLLTTLGAEQNIDRLHWQLSRFQGYVGLTNFMGARFVAAAAVMQPFMHEAARRGLGYLDDGAAPLSVAGRLAE GQAMPFARADLIVDAVPTSVEIDKALARLEDLAMKRGVAIGMTSALPVSVDRIGVWIKSLESRGVMLVPLTTAMLKSKST >Mature_399_residues TDTTDDLSTPLGQNPAPRRRLRLPFSLPQATGLLLGSILVVFLGFVFFNHDPLGGEPKARVAIRQAPVSDDKPTAIRPPP QQPDSAAVTAPSANGQKTITIIDGSSGSRQDVVVSGPGPDAADAGSAKAVVGVDQRLLEKSRHGMIPVAAADGLKPFKAY AAGTEADRAKAAKMPVVAIVVGGLGVGATKTTDAIMKLPPAVTLAFTPYGSDPGRLVAQARAQRHEVLLQVPMEPYDYPD NDPGPQTLLTTLGAEQNIDRLHWQLSRFQGYVGLTNFMGARFVAAAAVMQPFMHEAARRGLGYLDDGAAPLSVAGRLAEG QAMPFARADLIVDAVPTSVEIDKALARLEDLAMKRGVAIGMTSALPVSVDRIGVWIKSLESRGVMLVPLTTAMLKSKST
Specific function: Unknown
COG id: COG2861
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42061; Mature: 41930
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTTDDLSTPLGQNPAPRRRLRLPFSLPQATGLLLGSILVVFLGFVFFNHDPLGGEPKA CCCCCCCCCCCCCCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC RVAIRQAPVSDDKPTAIRPPPQQPDSAAVTAPSANGQKTITIIDGSSGSRQDVVVSGPGP EEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEECCCC DAADAGSAKAVVGVDQRLLEKSRHGMIPVAAADGLKPFKAYAAGTEADRAKAAKMPVVAI CCCCCCCCEEEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCCEEEE VVGGLGVGATKTTDAIMKLPPAVTLAFTPYGSDPGRLVAQARAQRHEVLLQVPMEPYDYP EECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEECCCCCCCCC DNDPGPQTLLTTLGAEQNIDRLHWQLSRFQGYVGLTNFMGARFVAAAAVMQPFMHEAARR CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLGYLDDGAAPLSVAGRLAEGQAMPFARADLIVDAVPTSVEIDKALARLEDLAMKRGVAI CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCEE GMTSALPVSVDRIGVWIKSLESRGVMLVPLTTAMLKSKST EECCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCC >Mature Secondary Structure TDTTDDLSTPLGQNPAPRRRLRLPFSLPQATGLLLGSILVVFLGFVFFNHDPLGGEPKA CCCCCCCCCCCCCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC RVAIRQAPVSDDKPTAIRPPPQQPDSAAVTAPSANGQKTITIIDGSSGSRQDVVVSGPGP EEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEECCCC DAADAGSAKAVVGVDQRLLEKSRHGMIPVAAADGLKPFKAYAAGTEADRAKAAKMPVVAI CCCCCCCCEEEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCCEEEE VVGGLGVGATKTTDAIMKLPPAVTLAFTPYGSDPGRLVAQARAQRHEVLLQVPMEPYDYP EECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEECCCCCCCCC DNDPGPQTLLTTLGAEQNIDRLHWQLSRFQGYVGLTNFMGARFVAAAAVMQPFMHEAARR CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLGYLDDGAAPLSVAGRLAEGQAMPFARADLIVDAVPTSVEIDKALARLEDLAMKRGVAI CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCEE GMTSALPVSVDRIGVWIKSLESRGVMLVPLTTAMLKSKST EECCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA