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The map label for this gene is yhcM [H]

Identifier: 75674616

GI number: 75674616

Start: 468593

End: 469777

Strand: Direct

Name: yhcM [H]

Synonym: Nwi_0418

Alternate gene names: 75674616

Gene position: 468593-469777 (Clockwise)

Preceding gene: 75674615

Following gene: 75674617

Centisome position: 13.77

GC content: 63.12

Gene sequence:

>1185_bases
ATGCTGTCCTCTCCTCCCCCATCGTTGCGGAATCACTATCAGTCTCTCGTCACATCAGGCGCGATCGAGGCGGACCCCGC
GCAGGCGCGGGCGGTGGAAGCTCTCGCCGCGCTGGACGAGCGGCTCATGGCCTACAAGCCCGCGGGCAAGTCGGGCTTCC
TCGACAGGCTGTTTCAGTCCGATGAAGAGCCTCCCCCGAAGGGACTCTATATCCATGGCGATGTCGGGCGCGGCAAAACC
ATGCTGATGGACCTGTTCTTCCAGGAGAGCCGGGTCGCCCACAAACGTCGGGTCCATTTTCATGAGTTCATGACAGACGT
GCATGAGCGCATTTTTGGCTTTCGCCAGAGCATCGCGCGGGGTGAGACGGCCGACGCCGATGTCGTTCAGCTCACCGCCG
CGTCGATCTTCGAGCAGGCATGGCTGTTATGCTTCGATGAGTTCCACGTCACCGATATCGCCGACGCCATGATTCTGGGG
CGTCTGTTCGCACGGCTGTTCGAACTCGGCACCGTCGTGGTGGCGACCTCGAACATCCCTCCCGGAGACCTCTACGAAGG
CGGCCTCAACCGCGTGCTTTTCCTGCCGTTCATTGCGCAGATCGAGGAGCGCATGGATGTGCTGCGTCTCGACGCCCGCA
CCGATTTCCGCCTGGAGAAGCTCGCCAGCGTCAAGATGTGGCTGACACCCGCCGACGCCGAAGCCGAGGCGGCGCTCGAC
AGGGCGTGGATGCTCATGACCGGCGGCGCGCCGTGCAAGCCGCGCGATGTCGCGATCAAGGGCCGCATTCTCCATGTGCC
ATGCTCGGCCCACGGGGTGGCGCGTTTCTCCTTTGCGGATCTCTGTGGGCAGCCGCTGGCGGCTTCCGACTATCTGCGGC
TCGCGCGCGACTACCACACCCTTATGATCGACCGCATCCCGGTGATGGACCACGCCGATCGCGACGCCGCCAAGCGGTTC
ATCGCCCTGATCGATGCGCTGTATGACAACGGCGTGAAACTGATGGCCTCGAGCGATGCCGATCCGCTTTCTCTTTATCG
CGCGAGCGACGGTTTAGAAGCGAACGAGTTCAAGCGCACTTCCTCGCGCCTGGTCGAGATGAACTCGGAATCCTATCTGG
CGAAGGCCCACGGTCGCGGTCATTCCGCCGCCCGCAGTTCCAGCACCGGACTGGTCGAGACATGA

Upstream 100 bases:

>100_bases
GTCGAGGACGCCTACGCGCTCGGCGCGTGATCGCCGGTTCGCAAGACTTTCAACCAGTTTTCGACGCGCATCCGCCCTCT
CAGGAGCCGTAACCTGTCCG

Downstream 100 bases:

>100_bases
GGGGGCTCGGTGCGACGGCTTGAACGAGTTCCGGGAAAGGTCTAGAGCATTTCACTTCTGATTGAATCAGCAGAGCCTGG
ATTATTGGTTTGGCGCGTTT

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MLSSPPPSLRNHYQSLVTSGAIEADPAQARAVEALAALDERLMAYKPAGKSGFLDRLFQSDEEPPPKGLYIHGDVGRGKT
MLMDLFFQESRVAHKRRVHFHEFMTDVHERIFGFRQSIARGETADADVVQLTAASIFEQAWLLCFDEFHVTDIADAMILG
RLFARLFELGTVVVATSNIPPGDLYEGGLNRVLFLPFIAQIEERMDVLRLDARTDFRLEKLASVKMWLTPADAEAEAALD
RAWMLMTGGAPCKPRDVAIKGRILHVPCSAHGVARFSFADLCGQPLAASDYLRLARDYHTLMIDRIPVMDHADRDAAKRF
IALIDALYDNGVKLMASSDADPLSLYRASDGLEANEFKRTSSRLVEMNSESYLAKAHGRGHSAARSSSTGLVET

Sequences:

>Translated_394_residues
MLSSPPPSLRNHYQSLVTSGAIEADPAQARAVEALAALDERLMAYKPAGKSGFLDRLFQSDEEPPPKGLYIHGDVGRGKT
MLMDLFFQESRVAHKRRVHFHEFMTDVHERIFGFRQSIARGETADADVVQLTAASIFEQAWLLCFDEFHVTDIADAMILG
RLFARLFELGTVVVATSNIPPGDLYEGGLNRVLFLPFIAQIEERMDVLRLDARTDFRLEKLASVKMWLTPADAEAEAALD
RAWMLMTGGAPCKPRDVAIKGRILHVPCSAHGVARFSFADLCGQPLAASDYLRLARDYHTLMIDRIPVMDHADRDAAKRF
IALIDALYDNGVKLMASSDADPLSLYRASDGLEANEFKRTSSRLVEMNSESYLAKAHGRGHSAARSSSTGLVET
>Mature_394_residues
MLSSPPPSLRNHYQSLVTSGAIEADPAQARAVEALAALDERLMAYKPAGKSGFLDRLFQSDEEPPPKGLYIHGDVGRGKT
MLMDLFFQESRVAHKRRVHFHEFMTDVHERIFGFRQSIARGETADADVVQLTAASIFEQAWLLCFDEFHVTDIADAMILG
RLFARLFELGTVVVATSNIPPGDLYEGGLNRVLFLPFIAQIEERMDVLRLDARTDFRLEKLASVKMWLTPADAEAEAALD
RAWMLMTGGAPCKPRDVAIKGRILHVPCSAHGVARFSFADLCGQPLAASDYLRLARDYHTLMIDRIPVMDHADRDAAKRF
IALIDALYDNGVKLMASSDADPLSLYRASDGLEANEFKRTSSRLVEMNSESYLAKAHGRGHSAARSSSTGLVET

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=399, Percent_Identity=38.0952380952381, Blast_Score=265, Evalue=4e-71,
Organism=Escherichia coli, GI1789627, Length=392, Percent_Identity=38.0102040816327, Blast_Score=240, Evalue=1e-64,
Organism=Caenorhabditis elegans, GI17505769, Length=415, Percent_Identity=33.9759036144578, Blast_Score=223, Evalue=1e-58,
Organism=Saccharomyces cerevisiae, GI6320783, Length=314, Percent_Identity=37.5796178343949, Blast_Score=189, Evalue=5e-49,
Organism=Drosophila melanogaster, GI20129913, Length=416, Percent_Identity=34.6153846153846, Blast_Score=216, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43641; Mature: 43641

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSPPPSLRNHYQSLVTSGAIEADPAQARAVEALAALDERLMAYKPAGKSGFLDRLFQS
CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
DEEPPPKGLYIHGDVGRGKTMLMDLFFQESRVAHKRRVHFHEFMTDVHERIFGFRQSIAR
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GETADADVVQLTAASIFEQAWLLCFDEFHVTDIADAMILGRLFARLFELGTVVVATSNIP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCC
PGDLYEGGLNRVLFLPFIAQIEERMDVLRLDARTDFRLEKLASVKMWLTPADAEAEAALD
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEECCCCCHHHHHHH
RAWMLMTGGAPCKPRDVAIKGRILHVPCSAHGVARFSFADLCGQPLAASDYLRLARDYHT
HHEEEEECCCCCCCCCEEEECEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
LMIDRIPVMDHADRDAAKRFIALIDALYDNGVKLMASSDADPLSLYRASDGLEANEFKRT
HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHEEEECCCCCCHHHHHHH
SSRLVEMNSESYLAKAHGRGHSAARSSSTGLVET
HHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSSPPPSLRNHYQSLVTSGAIEADPAQARAVEALAALDERLMAYKPAGKSGFLDRLFQS
CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
DEEPPPKGLYIHGDVGRGKTMLMDLFFQESRVAHKRRVHFHEFMTDVHERIFGFRQSIAR
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GETADADVVQLTAASIFEQAWLLCFDEFHVTDIADAMILGRLFARLFELGTVVVATSNIP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCC
PGDLYEGGLNRVLFLPFIAQIEERMDVLRLDARTDFRLEKLASVKMWLTPADAEAEAALD
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEECCCCCHHHHHHH
RAWMLMTGGAPCKPRDVAIKGRILHVPCSAHGVARFSFADLCGQPLAASDYLRLARDYHT
HHEEEEECCCCCCCCCEEEECEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
LMIDRIPVMDHADRDAAKRFIALIDALYDNGVKLMASSDADPLSLYRASDGLEANEFKRT
HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHEEEECCCCCCHHHHHHH
SSRLVEMNSESYLAKAHGRGHSAARSSSTGLVET
HHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]