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The map label for this gene is ydeB [H]

Identifier: 75674610

GI number: 75674610

Start: 460680

End: 461531

Strand: Direct

Name: ydeB [H]

Synonym: Nwi_0412

Alternate gene names: 75674610

Gene position: 460680-461531 (Clockwise)

Preceding gene: 75674609

Following gene: 75674614

Centisome position: 13.54

GC content: 62.44

Gene sequence:

>852_bases
ATGCCAAGCAAGACCGCCAGAGCGTCCGCAAACACCGCTACCTCGAAGACCGCCGCTTCGAAGACTGTTGCTTCTGCTTC
GAAGACCGCTGCTTCGAAAGCCGGCTCGAGGACGACTGCTTCCAAGATCGCTTCCGCCCCGAAGGTAGGTTCCAGGACCT
CTGTCAAGCCGACGGCGAAGTCCGCAGCGAAGGCGGCTGTGGCCAGTAAGCCGGCGGTGAAGCCGGTTGCCAGGGTGGGC
GCGCGCGTGGAGGAGCCGAAGAAGGTTCTGACCCAGCGCCAGGGGTTCAAGACCGGCGAGTTCGTGGTCTATCCCGCGCA
TGGTGTCGGCCAGATTCTGGCGATCGAAGAACAGGAGATTGCTGGCGCCAAGCTTGAGCTGTTCGTTATCAACTTCATCA
AGGACAAGATGACTCTGCGGGTGCCGACGGCGAAGGTTGCCAATGTCGGGATGCGTAAGCTGTCCGAGCCGGGTCTGGTC
AAGCGGGCGCTCGAAACCCTGAAGGGCCGCGCGCGCATCAAGCGCACCATGTGGTCGCGGCGGGCGCAGGAGTATGAAGC
GAAGATCAATTCCGGGGATATTGTCGCGATCGCCGAAGTGGTACGCGATCTCTATCGATCGGAATCCCAGCCGGAGCAGT
CCTACAGCGAACGTCAGCTTTACGAAGCCGCGCTTGATCGCCTATCACGCGAGATCGCGGTCGTTCAGCACGTGACGGAG
ACCGAAGCGGTCAAGGAAATCGAGGGTCAACTGGCCAAGAGCCCGCGGCGTGGCGCCAAGGCGGAGGCGGGCGGCGAGGC
TGACGGCGACCTGGAAGCAGCCGATGGCGATGATGCCGCCGTTGCTGCTTAA

Upstream 100 bases:

>100_bases
CGGTGGAACAAAAGCTCGTGCCCGGACTGCCGCCTCGATCACGCGAACGACGGCTGCCAAGCGTTCGGCCGGAAAATCCT
CAAGAAATAAAAGAGGCGAA

Downstream 100 bases:

>100_bases
CGGCGAGCAGCGATTATAGAACGCCGGCCTTTCGGCGAGGCGTTTGGACTTAATGGAGGCTCCCGCTCGGGGGCCTCTTT
TGGTTTCAGGGGCAGTTGAT

Product: transcription factor CarD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MPSKTARASANTATSKTAASKTVASASKTAASKAGSRTTASKIASAPKVGSRTSVKPTAKSAAKAAVASKPAVKPVARVG
ARVEEPKKVLTQRQGFKTGEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSEPGLV
KRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHVTE
TEAVKEIEGQLAKSPRRGAKAEAGGEADGDLEAADGDDAAVAA

Sequences:

>Translated_283_residues
MPSKTARASANTATSKTAASKTVASASKTAASKAGSRTTASKIASAPKVGSRTSVKPTAKSAAKAAVASKPAVKPVARVG
ARVEEPKKVLTQRQGFKTGEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSEPGLV
KRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHVTE
TEAVKEIEGQLAKSPRRGAKAEAGGEADGDLEAADGDDAAVAA
>Mature_282_residues
PSKTARASANTATSKTAASKTVASASKTAASKAGSRTTASKIASAPKVGSRTSVKPTAKSAAKAAVASKPAVKPVARVGA
RVEEPKKVLTQRQGFKTGEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSEPGLVK
RALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHVTET
EAVKEIEGQLAKSPRRGAKAEAGGEADGDLEAADGDDAAVAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 30026; Mature: 29895

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSKTARASANTATSKTAASKTVASASKTAASKAGSRTTASKIASAPKVGSRTSVKPTAK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHH
SAAKAAVASKPAVKPVARVGARVEEPKKVLTQRQGFKTGEFVVYPAHGVGQILAIEEQEI
HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEECHHHH
AGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSEPGLVKRALETLKGRARIKRTMWSR
CCCEEEEHHHHHHHCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHVTE
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEAVKEIEGQLAKSPRRGAKAEAGGEADGDLEAADGDDAAVAA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PSKTARASANTATSKTAASKTVASASKTAASKAGSRTTASKIASAPKVGSRTSVKPTAK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHH
SAAKAAVASKPAVKPVARVGARVEEPKKVLTQRQGFKTGEFVVYPAHGVGQILAIEEQEI
HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEECHHHH
AGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSEPGLVKRALETLKGRARIKRTMWSR
CCCEEEEHHHHHHHCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHVTE
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEAVKEIEGQLAKSPRRGAKAEAGGEADGDLEAADGDDAAVAA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]