| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
Click here to switch to the map view.
The map label for this gene is fdxA [H]
Identifier: 75674609
GI number: 75674609
Start: 459938
End: 460276
Strand: Direct
Name: fdxA [H]
Synonym: Nwi_0411
Alternate gene names: 75674609
Gene position: 459938-460276 (Clockwise)
Preceding gene: 75674608
Following gene: 75674610
Centisome position: 13.52
GC content: 54.57
Gene sequence:
>339_bases ATGACTTACGTCGTCAACGATGCCTGCATCAAATGCAAATATACCGATTGCGTTGAAGTTTGCCCCGTCGATTGCTTCTA CGAAGGCGAGAACATGCTCGTCATTCATCCGGACGAGTGCATCGATTGCGGGGTCTGCGAACCGGAATGCCCGGCGGAAG CCATCAAGCCGGACAGTGAACCGGGCGTTGAGAAATGGCTTGAGGTCAATGCAGAGTACGCTGGCAGGTGGCCGAACATC ACGCAGAAGAAGGAAACTCCGCCGGACGCCAAGGATTTCGAGGGCCAGGAGGGTAAGTTCGAGAAATATTTTTCTCCAGA TCCCGGCACGGGAGACTGA
Upstream 100 bases:
>100_bases GCTTGAGGGATCACTTGCGCCGCGCGACTGGTTCCCACGCTTGCGGCAGCGCTATTCCTGCGCTACCCAACCTGCAAAAT CGAGCCTCTCGGAGCCTTGG
Downstream 100 bases:
>100_bases TCGTTTTTCGCGCGCCCCTTGCAATGCCCGCTCCGGCGCTCCTGGTTCACCGGTCATTATTTACCTTTTTTGACGACTCG AGGCTCAGAACGGCCGCCAG
Product: 4Fe-4S ferredoxin, iron-sulfur binding
Products: NA
Alternate protein names: Ferredoxin II; FdII [H]
Number of amino acids: Translated: 112; Mature: 111
Protein sequence:
>112_residues MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSEPGVEKWLEVNAEYAGRWPNI TQKKETPPDAKDFEGQEGKFEKYFSPDPGTGD
Sequences:
>Translated_112_residues MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSEPGVEKWLEVNAEYAGRWPNI TQKKETPPDAKDFEGQEGKFEKYFSPDPGTGD >Mature_111_residues TYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSEPGVEKWLEVNAEYAGRWPNIT QKKETPPDAKDFEGQEGKFEKYFSPDPGTGD
Specific function: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions [H]
COG id: COG1146
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001450 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR000813 - InterPro: IPR022569 [H]
Pfam domain/function: PF11953 DUF3470; PF00037 Fer4 [H]
EC number: NA
Molecular weight: Translated: 12548; Mature: 12417
Theoretical pI: Translated: 3.94; Mature: 3.94
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
8.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 9.8 %Cys+Met (Translated Protein) 8.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 9.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE CEEEECCEEEEEECCCCHHHCCCEEEECCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCC PGVEKWLEVNAEYAGRWPNITQKKETPPDAKDFEGQEGKFEKYFSPDPGTGD CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE EEEECCEEEEEECCCCHHHCCCEEEECCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCC PGVEKWLEVNAEYAGRWPNITQKKETPPDAKDFEGQEGKFEKYFSPDPGTGD CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2388848; 2071578; 2277040 [H]