| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is purK [H]
Identifier: 74318680
GI number: 74318680
Start: 2735850
End: 2737004
Strand: Direct
Name: purK [H]
Synonym: Tbd_2662
Alternate gene names: 74318680
Gene position: 2735850-2737004 (Clockwise)
Preceding gene: 74318679
Following gene: 74318681
Centisome position: 94.02
GC content: 68.83
Gene sequence:
>1155_bases ATGTCGAATGAGGCGCAGCCGACGATGACTGCCCTGCCGATCCTGCCGGGTGCGACGCTCGGCATCCTGGGAGGCGGTCA ACTCGGCCGCATGTTCACGATCGCCGCACGCACCATGGGCTACAAGGTCATGGTGCTCGATCCTGACTTCGCGAGTCCGG CCGGGCAGATGGCCGACGTCCACCTGCAGGCCGACTACACCGACCACGGCGCCCTGCGCCAGCTCGGCGCGGCCTGCGCC GCGGTGACGACCGAATTCGAGAACGTACCGGCACAAAGCCTGATAGAACTCGCGAACCATTGCCGGGTCTCGCCCGGTGC CGCCGCAGTCGCGATCGCGCAGGACCGCAGCCACGAGAAATCCTGGCTCGCGCAGAACGGTTTCGCGACGGCGCCCTTCG CGCTGGTGTACAGCGAAGGCGACCTCGATGCGGCGCTCGCCGAGGTCGGCACCCCCGCGCTGCTCAAGGTCGCGCGCTTC GGCTACGACGGCAAGGGACAGGCGCGCGTCACCGACCGCGACGGCGCGCGCGCGGCTTTCGCCGAATTCGGTGCCCAGCC CTGCGTGCTCGAAGGCTTCGTCAAGCTCGAAGGCGAGCTATCGGTCGTCCTCGCGCGCGACGACGCGGGGCATTGCGCGA CCTTCCCCGTCGCCGAAAACCGCCACGAGCAGGGCATCCTCGACGTCTCGATCGTCCCCGCCCGTGTCGCCGATTCGCTC GCCGATGCCGCGCGCACGATGGCGCAAGACATCGCAGGAAAACTCGCCTACGTCGGCGTCATGGCGGTCGAGTTCTTCGT CGTCGACGGTCGCCTGCTCGTCAACGAGATCGCCCCGCGCCCGCACAACTCGGGGCATTACACGCTCGACGCCTGCGTCA CCGACCAGTTCGAGCAGCAGGTGCGCGCGCTATGCGGCCTGCCGCTCGGCGACACGCGCCTGCTCTCGCCGGTCGCGATG GTCAACATACTCGGCGACCGCTGGCACGACGGCGGGCCGCACTGGTCGGCGCTGCTCGCGCATCCGGCGATCAAGCTGCA TCTGTACGGCAAGGAGACCGCGCGCCCCGGCCGCAAGATGGGGCACTTCAACGTGCTCGACACGGACGTCGAGGCAGCGC TGAAACTCGCCGAAGCGATGCGCGATGCGCTCTAG
Upstream 100 bases:
>100_bases GCGGCGGCGCTGATCGCGCGCGCCGACCCCGGCCTCGCGGCGCAGCTCAACGAATTCCGCCGCGGCCAGTCCGATTCGGT GCTCGCGATGGAGCTGCCCG
Downstream 100 bases:
>100_bases CCGGGTGTTGCGGCAGGCGGGCGGAGTCGCCTTCGCACTACTCCTGGCTGGCGCCGCCGACGCGGGCGGCGATTCGGCAA CGCTGCGCGTCGGTCCCCAC
Product: phosphoribosylaminoimidazole carboxylase ATPase subunit
Products: NA
Alternate protein names: N5-CAIR synthase; 5-(carboxyamino)imidazole ribonucleotide synthetase [H]
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MSNEAQPTMTALPILPGATLGILGGGQLGRMFTIAARTMGYKVMVLDPDFASPAGQMADVHLQADYTDHGALRQLGAACA AVTTEFENVPAQSLIELANHCRVSPGAAAVAIAQDRSHEKSWLAQNGFATAPFALVYSEGDLDAALAEVGTPALLKVARF GYDGKGQARVTDRDGARAAFAEFGAQPCVLEGFVKLEGELSVVLARDDAGHCATFPVAENRHEQGILDVSIVPARVADSL ADAARTMAQDIAGKLAYVGVMAVEFFVVDGRLLVNEIAPRPHNSGHYTLDACVTDQFEQQVRALCGLPLGDTRLLSPVAM VNILGDRWHDGGPHWSALLAHPAIKLHLYGKETARPGRKMGHFNVLDTDVEAALKLAEAMRDAL
Sequences:
>Translated_384_residues MSNEAQPTMTALPILPGATLGILGGGQLGRMFTIAARTMGYKVMVLDPDFASPAGQMADVHLQADYTDHGALRQLGAACA AVTTEFENVPAQSLIELANHCRVSPGAAAVAIAQDRSHEKSWLAQNGFATAPFALVYSEGDLDAALAEVGTPALLKVARF GYDGKGQARVTDRDGARAAFAEFGAQPCVLEGFVKLEGELSVVLARDDAGHCATFPVAENRHEQGILDVSIVPARVADSL ADAARTMAQDIAGKLAYVGVMAVEFFVVDGRLLVNEIAPRPHNSGHYTLDACVTDQFEQQVRALCGLPLGDTRLLSPVAM VNILGDRWHDGGPHWSALLAHPAIKLHLYGKETARPGRKMGHFNVLDTDVEAALKLAEAMRDAL >Mature_383_residues SNEAQPTMTALPILPGATLGILGGGQLGRMFTIAARTMGYKVMVLDPDFASPAGQMADVHLQADYTDHGALRQLGAACAA VTTEFENVPAQSLIELANHCRVSPGAAAVAIAQDRSHEKSWLAQNGFATAPFALVYSEGDLDAALAEVGTPALLKVARFG YDGKGQARVTDRDGARAAFAEFGAQPCVLEGFVKLEGELSVVLARDDAGHCATFPVAENRHEQGILDVSIVPARVADSLA DAARTMAQDIAGKLAYVGVMAVEFFVVDGRLLVNEIAPRPHNSGHYTLDACVTDQFEQQVRALCGLPLGDTRLLSPVAMV NILGDRWHDGGPHWSALLAHPAIKLHLYGKETARPGRKMGHFNVLDTDVEAALKLAEAMRDAL
Specific function: Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) [H]
COG id: COG0026
COG function: function code F; Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain [H]
Homologues:
Organism=Escherichia coli, GI1786733, Length=360, Percent_Identity=33.6111111111111, Blast_Score=170, Evalue=2e-43, Organism=Escherichia coli, GI1788155, Length=391, Percent_Identity=26.8542199488491, Blast_Score=100, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6324702, Length=364, Percent_Identity=34.6153846153846, Blast_Score=212, Evalue=1e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006115 - InterPro: IPR005875 - InterPro: IPR011761 - InterPro: IPR003135 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 [H]
Pfam domain/function: PF02222 ATP-grasp; PF03446 NAD_binding_2 [H]
EC number: =6.3.4.18 [H]
Molecular weight: Translated: 40739; Mature: 40608
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNEAQPTMTALPILPGATLGILGGGQLGRMFTIAARTMGYKVMVLDPDFASPAGQMADV CCCCCCCCEEEECCCCCCEEEEECCCCCCHHEEEEEHHHCEEEEEECCCCCCCCCCEEEE HLQADYTDHGALRQLGAACAAVTTEFENVPAQSLIELANHCRVSPGAAAVAIAQDRSHEK EEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHH SWLAQNGFATAPFALVYSEGDLDAALAEVGTPALLKVARFGYDGKGQARVTDRDGARAAF HHHHCCCCCCCCEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCHHHH AEFGAQPCVLEGFVKLEGELSVVLARDDAGHCATFPVAENRHEQGILDVSIVPARVADSL HHHCCCCCEEEHHEEECCCEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECHHHHHHH ADAARTMAQDIAGKLAYVGVMAVEFFVVDGRLLVNEIAPRPHNSGHYTLDACVTDQFEQQ HHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEHHCCCCCCCCCCEEEEHHHHHHHHHH VRALCGLPLGDTRLLSPVAMVNILGDRWHDGGPHWSALLAHPAIKLHLYGKETARPGRKM HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEEEECCCCCCCCCCC GHFNVLDTDVEAALKLAEAMRDAL CCCEEECCCHHHHHHHHHHHHHCC >Mature Secondary Structure SNEAQPTMTALPILPGATLGILGGGQLGRMFTIAARTMGYKVMVLDPDFASPAGQMADV CCCCCCCEEEECCCCCCEEEEECCCCCCHHEEEEEHHHCEEEEEECCCCCCCCCCEEEE HLQADYTDHGALRQLGAACAAVTTEFENVPAQSLIELANHCRVSPGAAAVAIAQDRSHEK EEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHH SWLAQNGFATAPFALVYSEGDLDAALAEVGTPALLKVARFGYDGKGQARVTDRDGARAAF HHHHCCCCCCCCEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCHHHH AEFGAQPCVLEGFVKLEGELSVVLARDDAGHCATFPVAENRHEQGILDVSIVPARVADSL HHHCCCCCEEEHHEEECCCEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECHHHHHHH ADAARTMAQDIAGKLAYVGVMAVEFFVVDGRLLVNEIAPRPHNSGHYTLDACVTDQFEQQ HHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEHHCCCCCCCCCCEEEEHHHHHHHHHH VRALCGLPLGDTRLLSPVAMVNILGDRWHDGGPHWSALLAHPAIKLHLYGKETARPGRKM HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEEEECCCCCCCCCCC GHFNVLDTDVEAALKLAEAMRDAL CCCEEECCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3036807; 9384377 [H]